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Chlorimuron-ethyl is currently the primary herbicide used for chemical weed control in a soybean field. In this study, a solid microbial inoculum (corn stalk-white rot fungus (W-1)) was prepared for the remediation of farmland soil contaminated by chlorimuron-ethyl. Firstly, the preparation method of the microbial inoculum was studied. Secondly, the degradation rate of the chlorimuron-ethyl in the ground by the solid microbial inoculum is improved by optimizing the proportion of the protective agent. Then the effects of applying solid microbial inoculum, free bacteria and corn straw on the degradation rate of chlorimuron-ethyl in soil were weighed. Finally, Illumina MiSeq sequencing was used to measure the composition and diversity of bacterial and fungal communities in the ground before and after using microbial inoculum. The degradation rate of chlorimuron-ethyl in soil by solid microbial inoculum was 84.87% after 20 d using corn straw as the support, room temperature drying, 4% Ca(PO) as the protective drying agent, and 1%(w) dextrin as the ultraviolet protective agent. Inoculation of white rot fungi could significantly affect the community structure of bacteria and fungi in the soil, making the chlorimuron-ethyl degrading communities become the dominant communities and playing an essential role in the degradation of chlorimuron-ethyl. The results showed that using solid microbial inoculum was an effective way to repair farmland soil polluted by chlorimuron-ethyl.
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http://dx.doi.org/10.1007/s10529-024-03497-w | DOI Listing |
PLoS Biol
September 2025
Environmental Genomics and Systems Biology, Lawrence Berkeley National Laboratory, Berkeley, California, United States of America.
Inter-laboratory replicability is crucial yet challenging in microbiome research. Leveraging microbiomes to promote soil health and plant growth requires understanding underlying molecular mechanisms using reproducible experimental systems. In a global collaborative effort involving five laboratories, we aimed to help advance reproducibility in microbiome studies by testing our ability to replicate synthetic community assembly experiments.
View Article and Find Full Text PDFPrev Nutr Food Sci
August 2025
Department of Biotechnology, Graduate School of Engineering, The University of Osaka, Osaka 565-0871, Japan.
B vitamins are integral in maintaining human health. Owing to its high B vitamin contents, tempeh serves as an excellent plant-based option to achieve an adequate intake of these nutrients through diet. In order to investigate the metabolomic profile of tempeh and modulate the contents of vitamins B and B in it, we employed microbial interventions using two species of lactic acid bacteria (LAB) and various inoculum sizes in the soaking step during tempeh production.
View Article and Find Full Text PDFData Brief
October 2025
Natural Antioxidant Innovation Research Unit, Department of Biotechnology, Faculty of Technology, Mahasarakham University, Khamriang, Kantarawichai, Maha Sarakham, 44150, Thailand.
This study aimed to evaluate the optimal nitrogen source for the production of antioxidant exopolysaccharides (EPSs) by KW8 using cassava pulp carbon source. Various nitrogen sources were initially screened, and yeast extract was identified as the most effective. Further optimization was conducted using Response Surface Methodology (RSM) with a Central Composite Design (CCD) to assess the influence of key parameters, including pH, inoculum size, carbon-to-nitrogen (C/N) ratio, and agitation speed on EPS production.
View Article and Find Full Text PDFAnim Microbiome
September 2025
Department of Animal Sciences, University of Illinois Urbana-Champaign, Urbana, IL, 61801, USA.
Metronidazole is a potent antibiotic often prescribed to treat gastrointestinal enteropathies, but is known to induce loose stools, negatively alter the fecal microbiome, and affect fecal metabolites. Dietary intervention may aid in the recovery following antibiotic cessation, but little research has been conducted regarding the potential of fiber utilization for microbial recovery in canines. Using an in vitro fermentation assay, the objective of this study was to investigate the fermentation characteristics of dietary fibers using fecal inocula from dogs treated with metronidazole.
View Article and Find Full Text PDFSci Rep
September 2025
Biochemistry Department, Faculty of Agriculture, Cairo University, Giza, Egypt.
In this study, three strains of alkaline protease-producing bacteria were isolated from marine seawater collected at a depth of 15 meters off the coast of Ras Sedr at Egypt's Red Sea. The isolates were morphologically and biochemically characterized, and the most efficient strain was identified via 16S rRNA sequencing, showing 99% similarity to Bacillus amyloliquefaciens MPA 1034. Our newly isolated strain was deposited in the GenBank under the accession number PP034178.
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