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Fluorescence imaging in the second near-infrared window (NIR-II) is burgeoning because of its higher imaging fidelity in monitoring physiological and pathological processes than clinical visible/the second near-infrared window fluorescence imaging. Notably, the imaging fidelity is heavily dependent on fluorescence agents. So far, indocyanine green, one of the polymethine dyes, with good biocompatibility and renal clearance is the only dye approved by the Food and Drug Administration, but it shows relatively low NIR-II brightness. Importantly, tremendous efforts are devoted to synthesizing polymethine dyes for imaging preclinically and clinically. They have shown feasibility in the customization of structure and properties to fulfill various needs in imaging and therapy. Herein, a timely update on NIR-II polymethine dyes, with a special focus on molecular design strategies for fluorescent, photoacoustic, and multimodal imaging, is offered. Furthermore, the progress of polymethine dyes in sensing pathological biomarkers and even reporting drug release is illustrated. Moreover, the NIR-II fluorescence imaging-guided therapies with polymethine dyes are summarized regarding chemo-, photothermal, photodynamic, and multimodal approaches. In addition, artificial intelligence is pointed out for its potential to expedite dye development. This comprehensive review will inspire interest among a wide audience and offer a handbook for people with an interest in NIR-II polymethine dyes.
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http://dx.doi.org/10.1002/adhm.202304506 | DOI Listing |
J Chem Theory Comput
September 2025
Department of Chemistry and Biochemistry, University of California Los Angeles, Los Angeles, California 90095, United States.
We present a mixed basis-set approach to obtain optical absorption spectra within a generalized Kohn-Sham time-dependent density functional theory framework. All occupied valence molecular orbitals (MOs) are expanded in a plane-wave (PW) basis, while unoccupied MOs are derived primarily from localized atomic basis functions. The method accelerates spectral convergence when compared to fully PW-based simulations, with a 2-3 fold reduction in the number of unoccupied MOs entering the Casida equation.
View Article and Find Full Text PDFJ Am Chem Soc
August 2025
School of Chemistry, Chemical Engineering and Biotechnology, Nanyang Technological University, 70 Nanyang Drive, Singapore 637457, Singapore.
Fluorescence imaging in the shortwave infrared (SWIR) window enables deeper tissue and higher-contrast visualization of pathological events compared to that in the conventional near-infrared (NIR) window. However, specific SWIR detection of biomarkers of interest remains challenging because few fluorophore scaffolds are available to be further modified into biomarker-activatable SWIR probes. Herein, we employ a highly efficient approach to synthesize six hemicyanine derivatives with emissions extending to the SWIR region and structural amenability for construction of activatable probes.
View Article and Find Full Text PDFJ Phys Chem A
August 2025
Departamento de Química Orgánica y Fisicoquímica, Facultad de Ciencias Químicas y Farmacéuticas, Universidad de Chile, Santiago 8380804, Chile.
The solvatochromic behavior of β-carotene and of two analogous cationic polymethine dyes with distinct chain-lengths (PD 2501 and PD 1659) was investigated theoretically by means of TD-DFT calculations of their solvatochromic transition energies in ten solvents, at three levels of theory, with linear-response (LR-CPCM) and corrected linear-response (cLR- and cLR-CPCM) approaches. The calculated transition energies of β-carotene and of PD 2501 showed good correlations ( > 0.96) with the values of the medium polarizability ().
View Article and Find Full Text PDFJ Am Chem Soc
June 2025
Department of Applied Chemistry, National Yang Ming Chiao Tung University, Hsinchu 300, Taiwan, R.O.C.
NIR-II fluorophores (1000-1700 nm) are pivotal for biomedical imaging, offering deep-tissue penetration and high signal-to-noise ratios but suffer from low quantum yields (QY < 0.01%) beyond 1200 nm. To date, most reported NIR-II small-molecule dyes are derived from polymethine and xanthene frameworks.
View Article and Find Full Text PDFChemistryOpen
September 2025
Institute of Organic Chemistry, National Academy of Sciences of Ukraine, 5 Akademika Kukharya st., Kyiv, 02094, Ukraine.
A series of long-chain ketocyanines (KCYs), in which chromophore asymmetry is achieved through the noncentral positioning of the acceptor carbonyl group and variation in the electron-donating ability of the end groups, is synthesized via sequential condensation reactions and isolated with good preparative yields. The obtained dyes exhibit positive solvatochromism, with its range increasing as the donor strength of the terminal groups grows and upon transition to higher vinylogs. The new KCYs are efficient fluorophores, with fluorescence quantum yields up to 40% and large Stokes shifts, while their fluorescence bands extend into the near-infrared (NIR) spectral region.
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