Category Ranking
98%
Total Visits
921
Avg Visit Duration
2 minutes
Citations
20
Article Abstract
Root-lesion nematodes (genus ) belong to a diverse group of plant-parasitic nematodes (PPN) with a worldwide distribution. Despite being an economically important PPN group of more than 100 species, genome information related to genus is scarcely available. Here, we report the draft genome assembly of generated on the PacBio Sequel IIe System using the ultra-low DNA input HiFi sequencing workflow. The final assembly created using 500 nematodes consisted of 276 decontaminated contigs, with an average contig N50 of 1.72 Mb and an assembled draft genome size of 227.24 Mb consisting of 51,146 predicted protein sequences. The benchmarking universal single-copy ortholog (BUSCO) analysis with 3131 nematode BUSCO groups indicated that 65.4% of the BUSCOs were complete, whereas 24.0%, 41.4%, and 1.8% were single-copy, duplicated, and fragmented, respectively, and 32.8% were missing. The outputs from GenomeScope2 and Smudgeplots converged towards a diploid genome for . The data provided here will facilitate future studies on host plant-nematode interactions and crop protection at the molecular level.
Download full-text PDF |
Source |
|---|---|
| http://www.ncbi.nlm.nih.gov/pmc/articles/PMC10138993 | PMC |
| http://dx.doi.org/10.3390/ijms24087311 | DOI Listing |
Publication Analysis
Top Keywords
Similar Publications
De novo assembled nuclear, chloroplast and mitochondrial genomes show high intraspecific variation in the tropical rainforest species Symphonia globulifera.
G3 (Bethesda)
September 2025
INRAE, UR629 URFM, Ecologie des Forêts Méditerranéennes, Site Agroparc, Domaine Saint Paul, F-84914 Avignon Cedex 9, France.
Symphonia globulifera (Clusiaceae) has emerged as a model organism in tropical forest ecology and evolution due to its significant ecological role and complex biogeographical history. Originating from Africa, this species has independently colonized Caribbean, Central and South America three times, becoming a key component of tropical ecosystems across these regions. Despite the ecological importance of S.
View Article and Find Full Text PDFGenomic insights, determination of quorum quenching potential of a beta-lactamase enzyme from Chromohalobacter sp. strain D23 against Aeromonas hydrophila and molecular docking study.
Int Microbiol
September 2025
Department of Microbiology, The University of Burdwan, Bardhaman, West Bengal, 713104, India.
Biofilm formation and other virulence phenotypes under quorum sensing regulation play a vital role in the pathogenicity of Aeromonas hydrophila, triggering the emergence of multi-drug resistance (MDR) which increases fish mortality, environmental issues, and economic loss in aquaculture, necessitating the discovery of novel drugs to bypass standard antibiotics. Here, quorum quenching (QQ) may be a sustainable anti-virulent approach. β-Lactamase enzyme obtained from Chromohalobacter sp.
View Article and Find Full Text PDFDraft genome sequence of iso11, a polypropylene-degrading bacterium isolated from a peat bog.
Microbiol Resour Announc
September 2025
School of Biological Sciences, Queen's University Belfast, Belfast, United Kingdom.
We report the draft genome sequence of iso11, a polypropylene-degrading bacterium isolated from a peat bog in Northern Ireland. Sequencing identified a 5,845,760 bp genome with 67.98% GC content, and annotation revealed several genes associated with hydrocarbon and plastic biodegradation, highlighting its potential for their bioremediation.
View Article and Find Full Text PDFDraft genome sequences of , a species of strict anaerobic beer spoiling cocci.
Microbiol Resour Announc
September 2025
Chair of Microbiology, Technical University of Munich, Freising, Germany.
The only two commercially available strains of were cultivated and their genomes sequenced. As recurring beer spoiling bacteria, they cause unwanted turbidity and unpleasant odors. Their genomes harbor a number of putative defense mechanisms explaining their much-needed resilience to survive in the brewing environment.
View Article and Find Full Text PDFDevelopment of an effective DNA vaccine against ayu atypical cellular gill disease using draft genome information of the causative agent, Plecoglossus altivelis poxvirus.
Virology
August 2025
Department of Marine Biosciences, Tokyo University of Marine Science and Technology, Tokyo, 108-8477, Japan; Institute for Aquaculture Biotechnology (IAB), Tokyo University of Marine Science and Technology, Tokyo, 108-8477, Japan. Electronic address:
Atypical cellular gill disease (ACGD) in ayu (Plecoglossus altivelis) caused by P. altivelis poxvirus (PaPV) infection has led to significant economic losses in Japanese aquaculture. The propagation of PaPV has not yet been successfully achieved in cultured cells.
View Article and Find Full Text PDF