98%
921
2 minutes
20
Chromosomes occupy discrete spaces in the interphase cell nucleus, called chromosome territory. The structural and functional relevance of chromosome territory remains elusive. We fused chromosome 15 and 17 in mouse haploid embryonic stem cells (haESCs), resulting in distinct changes of territories in the cognate chromosomes, but with little effect on gene expression, pluripotency and gamete functions of haESCs. The karyotype-engineered haESCs were successfully implemented in generating heterozygous (2n = 39) and homozygous (2n = 38) mouse models. Mice containing the fusion chromosome are fertile, and their representative tissues and organs display no phenotypic abnormalities, suggesting unscathed development. These results indicate that the mammalian chromosome architectures are highly resilient, and reorganization of chromosome territories can be readily tolerated during cell differentiation and mouse development.
Download full-text PDF |
Source |
---|---|
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC9873915 | PMC |
http://dx.doi.org/10.1038/s41421-022-00511-1 | DOI Listing |
Genome Biol
September 2025
Department of Orthopaedics and Traumatology, The Chinese University of Hong Kong, Hong Kong SAR, China.
Background: DNA G-quadruplexes (G4s) are non-canonical secondary structures formed in guanine-rich DNA sequences and play important roles in modulating biological processes through a variety of gene regulatory mechanisms. Emerging G4 profiling allows global mapping of endogenous G4 formation.
Results: Here in this study, we map the G4 landscapes in adult skeletal muscle stem cells (MuSCs), which are essential for injury-induced muscle regeneration.
Methods Mol Biol
August 2025
Institut de Génétique Humaine, Univ Montpellier, CNRS, Montpellier, France.
Three-dimensional DNA fluorescent in situ hybridization (3D-FISH) has been extensively used for the study of chromosome organization, from large-scale chromosome territories to finer sub-megabase structures, such as topologically associating domains (TADs) or internal TAD features such as chromatin loops. The development of oligo-based technology has rendered this technique highly versatile and allowed to study chromosomal structures at different scale levels, as well as structural variations such as deletions, duplications, or translocations, as those occurring in cancer and chromothripsis. Here, we present a comprehensive Oligopaint FISH protocol, from probe design and production to FISH, microscopy, and specific analysis that can be used with various cell lines.
View Article and Find Full Text PDFNucleic Acids Res
August 2025
Division of Life Science, The Hong Kong University of Science and Technology, Clear Water Bay, NT, HKSAR, China.
Spermatogenesis is a highly regulated process that requires precise chromatin remodeling, which includes the incorporation of testis-specific histone variants. While several of these variants have been characterized, the role of H2B.W2, a member of the H2BW family, remains largely unclear.
View Article and Find Full Text PDFJ Genet Genomics
August 2025
Centre for Conservation Ecology and Genomics, Institute for Applied Ecology, University of Canberra, Canberra, 2601, Australian Capital Territory, Australia.
Lizards usually exhibit frequent turnovers and a much greater diversity of sex determination mechanisms compared to birds and mammals, with the conserved ZW sex chromosomes of anguimorph lizards originating over 115 million years ago a seeming exception. We previously discovered in an anguimorph lizard Varanus acanthurus (Vac) whose entire chrW, but not chrZ is homologous to part of the chr2 by cytogenetic mapping, suggesting its complex history of sex chromosome evolution yet to be elucidated. To address this, we assemble a chromosome-level genome, and provide evidence that the Vac sex chromosome pair has undergone at least two times of recombination loss, producing a pattern of evolutionary strata like that of birds and mammals.
View Article and Find Full Text PDFInt J Biol Macromol
September 2025
School of Biological Sciences and Biotechnology, Goa University, Goa 403206, India.
Chromatin organization in the nucleus is a nonrandom and highly organized process. This nonrandom chromatin arrangement in the nucleus is the crucial regulator of genome function and stability. Over the recent decades, the development of various high-throughput experimental methods has revealed chromatin architecture across multiple genomic scales from nucleosome positioning to topologically associating domains (TADs) and chromosome territories.
View Article and Find Full Text PDF