Controllable assembly of synthetic constructs with programmable ternary DNA interaction.

Nucleic Acids Res

School of Life Sciences, Tsinghua University-Peking University Center for Life Sciences, Center for Synthetic and Systems Biology, Tsinghua University, Beijing 100084, China.

Published: July 2022


Category Ranking

98%

Total Visits

921

Avg Visit Duration

2 minutes

Citations

20

Article Abstract

Compared with the dual binding components in a binary interaction, the third component of a ternary interaction often serves as modulator or regulator in biochemical processes. Here, we presented a programmable ternary interaction strategy based on the natural DNA triplex structure. With the DNA triplex-based ternary interaction, we have successfully demonstrated controllable hierarchical assemblies from nanometer scale synthetic DNA nanostructure units to micrometer scale live bacteria. A selective signaling system responsive to orthogonal nucleic acid signals via ternary interaction was also demonstrated. This assembly method could further enrich the diversified design schemes of DNA nanotechnology.

Download full-text PDF

Source
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC9262601PMC
http://dx.doi.org/10.1093/nar/gkac478DOI Listing

Publication Analysis

Top Keywords

ternary interaction
16
programmable ternary
8
interaction demonstrated
8
interaction
6
ternary
5
dna
5
controllable assembly
4
assembly synthetic
4
synthetic constructs
4
constructs programmable
4

Similar Publications

Background: Kaempferol (KAE), a bioactive flavonoid, has limited solubility and stability in water. Zein-gum arabic (GA) nanoparticles (NPs) are promising carriers for KAE, but the influence of preparation methods on their structure and properties remains unclear. This study investigated the effect of preparation method on the structure and properties of KAE-loaded zein-GA NPs.

View Article and Find Full Text PDF

Objective: This study aimed to investigate comorbidity patterns and potential pathogenic mechanisms in patients with Hashimoto's thyroiditis (HT).

Methods: Patients with HT who visited the outpatient clinic of the Thyroid Department at Dongzhimen Hospital, Beijing University of Chinese Medicine, between June 2021 and December 2024 were included. Association rule analysis and logistic regression analysis were performed using SPSS 25.

View Article and Find Full Text PDF

Predicting Antibody-Antigen (Ab-Ag) docking and structure-based design represent significant long-term and therapeutically important challenges in computational biology. We present SAGERank, a general, configurable deep learning framework for antibody design using Graph Sample and Aggregate Networks. SAGERank successfully predicted the majority of epitopes in a cancer target dataset.

View Article and Find Full Text PDF

Intermetallic compounds belong to an important class of materials, not only due to the sheer number of compounds known but also due to their application in everyday life. These compounds possess their very own peculiarities, especially when it comes to chemical bonding. To address this point, bonding analyses based on Crystal Orbital Bond Index (COBI) values, Löwdin charges, and - for the first time - oxidation numbers (ON ) were conducted, all extracted from delocalized plane-wave functions.

View Article and Find Full Text PDF

Hydrogen Bond Disruption-Induced Ion Rearrangement in Acetonitrile-Water-Sodium Sulfate Solutions.

J Phys Chem B

September 2025

Key Laboratory of Physics and Technology for Advanced Batteries, College of Physics, Jilin University, Changchun 130012, China.

Understanding hydrogen bonding and ion-specific interactions in water, sodium sulfate (NaSO), and acetonitrile (ACN) systems remains challenging due to their complex, dynamic nature. Here, Raman spectroscopy is employed to probe hydrogen bonding networks and ion reorganization in NaSO aqueous solutions with different ACN concentrations. The results indicate that, at low ACN concentrations in the ternary solutions, hydrogen bonding between ACN and water molecules disrupts the original hydration structure of the ions, resulting in the formation of small ion clusters via electrostatic interactions.

View Article and Find Full Text PDF