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Nonmotile microorganisms often enter new habitats by co-transport with motile microorganisms. Here, we report that also lytic phages can co-transport with hyphal-riding bacteria and facilitate bacterial colonization of a new habitat. This is comparable to the concept of biological invasions in macroecology. In analogy to invasion frameworks in plant and animal ecology, we tailored spatially organized, water-unsaturated model microcosms using hyphae of Pythium ultimum as invasion paths and flagellated soil-bacterium Pseudomonas putida KT2440 as carrier for co-transport of Escherichia virus T4. P. putida KT2440 efficiently dispersed along P. ultimum to new habitats and dispatched T4 phages across air gaps transporting ≈0.6 phages bacteria. No T4 displacement along hyphae was observed in the absence of carrier bacteria. If E. coli occupied the new habitat, T4 co-transport fueled the fitness of invading P. putida KT2440, while the absence of phage co-transport led to poor colonization followed by extinction. Our data emphasize the importance of hyphal transport of bacteria and associated phages in regulating fitness and composition of microbial populations in water-unsaturated systems. As such co-transport seems analogous to macroecological invasion processes, hyphosphere systems with motile bacteria and co-transported phages could be useful models for testing hypotheses in invasion ecology.
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http://dx.doi.org/10.1038/s41396-021-01155-x | DOI Listing |
Commun Biol
August 2025
Department of Civil and Environmental Engineering, McCormick School of Engineering and Applied Science, Northwestern University, Evanston, IL, USA.
Soil Pseudomonas species, which thrive on lignin derivatives, are widely explored for biotechnology applications in lignin valorization. However, how the native metabolism coordinates phenolic carbon processing with required cofactor generation remains poorly understood. Here, we achieve quantitative understanding of this metabolic balance through a detailed multi-omics investigation of Pseudomonas putida KT2440 grown on four common phenolic acid substrates: ferulate, p-coumarate, vanillate, and 4-hydroxybenzoate.
View Article and Find Full Text PDFChemosphere
August 2025
Department of Biotechnology, Faculty of Biological Science and Technology, University of Isfahan, Isfahan, Iran. Electronic address:
Arsenic is a highly toxic metalloid that poses significant environmental and health risks due to its widespread presence in soil, water, and industrial processes. Its accumulation in living organisms can lead to severe health issues, underscoring the need for effective bioremediation strategies. In this study, the gene encoding ArsR from Corynebacterium glutamicum (CgArsR1) was cloned into the plasmid pSEVA234 and transformed into Pseudomonas putida KT2440.
View Article and Find Full Text PDFBioresour Technol
December 2025
National Key Laboratory for the Development and Utilization of Forest Food Resources, Nanjing Forestry University, Nanjing 210037, China; Jiangsu Co-Innovation Center of Efficient Processing and Utilization of Forest Resources, College of Chemical Engineering, Nanjing Forestry University, Nanjing 21
Sci Rep
August 2025
Faculty of Engineering, Balkh University, Balkh, Afghanistan.
This research investigates the impact of bacterial growth on the pH of culture media, emphasizing its significance in microbiological and biotechnological applications. A range of sophisticated artificial intelligence methods, including One-Dimensional Convolutional Neural Network (1D-CNN), Artificial Neural Networks (ANN), Decision Tree (DT), Ensemble Learning (EL), Adaptive Boosting (AdaBoost), Random Forest (RF), and Least Squares Support Vector Machine (LSSVM), were utilized to model and predict pH variations with high accuracy. The Coupled Simulated Annealing (CSA) algorithm was employed to optimize the hyperparameters of these models, enhancing their predictive performance.
View Article and Find Full Text PDFWater Res
August 2025
Department of Civil and Environmental Engineering, The University of Auckland, Auckland, New Zealand; Water Research Centre, The University of Auckland, Auckland, New Zealand. Electronic address:
Neuroendocrine compounds discharged into wastewater systems represent an emerging challenge at the intersection of human physiology and environmental microbiology. l-norepinephrine (L-NE), which has been recognized to potentiate growth of human and animal bacterial pathogens, is discharged in sewage through urine and faeces. While extensive pure culture studies have established l-NE's capacity to modulate bacterial virulence through iron acquisition and quorum sensing pathways, its impact on complex microbial communities, where intricate metabolic networks and interspecies interactions dominate, remains largely unexplored.
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