Considerations on the Identity and Diversity of Organisms Affiliated with -Proposal for a New Species, .

Microorganisms

Cluster of Microbial Ecology, Groningen Institute for Evolutionary Life Sciences, University of Groningen, 9747 AG Groningen, The Netherlands.

Published: September 2021


Category Ranking

98%

Total Visits

921

Avg Visit Duration

2 minutes

Citations

20

Article Abstract

Plant biomass offers great potential as a sustainable resource, and microbial consortia are primordial in its bioconversion. The wheat-straw-biodegradative bacterial strain w15 has drawn much attention as a result of its biodegradative potential and superior degradation performance in bacterial-fungal consortia. Strain w15 was originally assigned to the species based on its 16S ribosomal RNA (rRNA) gene sequence. A closer examination of this taxonomic placement revealed that the sequence used has 98.9% identity with the 'divergent' 16S rRNA gene sequence of NCTC 11343, yet lower relatedness with the canonical 16S rRNA sequence. A specific region of the gene, located between positions 186 and 210, was found to be highly variable and determinative for the divergence. To solve the identity of strain w15, genome metrics and analyses of ecophysiological niches were undertaken on a selection of strains assigned to and related species. These analyses separated all strains into three clusters, with strain w15, together with strain BIGb0170, constituting a separate radiation, next to and . Moreover, the strains denoted FDAARGOS 1141 and 1142 were placed inside . We propose the renaming of strains w15 and BIGb0170 as members of the novel species, coined .

Download full-text PDF

Source
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC8540502PMC
http://dx.doi.org/10.3390/microorganisms9102057DOI Listing

Publication Analysis

Top Keywords

strain w15
16
assigned species
8
rrna gene
8
gene sequence
8
16s rrna
8
strain
5
w15
5
considerations identity
4
identity diversity
4
diversity organisms
4

Similar Publications

Bread is a greatly consumed bakery product worldwide. Unfortunately, it is an optimal substrate for fungal contamination and deterioration (aw > 0.95), commonly caused by the genera Penicillium, Paecilomyces, and Aspergillus, resulting in significant economic losses.

View Article and Find Full Text PDF

Biosynthesis of Sialyllacto--tetraose c in Engineered .

J Agric Food Chem

November 2024

State Key Laboratory of Food Science and Resources, Jiangnan University, Wuxi, Jiangsu 214122, China.

Article Synopsis
  • Human milk oligosaccharides (HMOs), especially sialyllacto-tetraose c (LST c), are crucial for infant health, prompting research into their efficient production.
  • The study utilized multivariate modular metabolic engineering (MMME) to enhance the biosynthesis of LST c by optimizing sialyltransferases and metabolic pathways in microbial strains.
  • The engineered strain W15 achieved a high LST c production, with a concentration of 922.2 mg/L in fed-batch fermentation, demonstrating a successful strategy for producing this important oligosaccharide.
View Article and Find Full Text PDF

Halophilic archaea are a unique group of microorganisms that thrive in high-salt environments, exhibiting remarkable adaptations to survive extreme conditions. Archaeological wood and El-Hamra Lake serve as a substrate for a diverse range of microorganisms, including archaea, although the exact role of archaea in archaeological wood biodeterioration remains unclear. The morphological and chemical characterizations of archaeological wood were evaluated using FTIR, SEM, and EDX.

View Article and Find Full Text PDF

Quantum tailoring for polarization-discriminating BiS nanowire photodetectors and their multiplexing optical communication and imaging applications.

Mater Horiz

August 2023

State Key Laboratory of Optoelectronic Materials and Technologies, Nanotechnology Research Center, School of Materials Science & Engineering, Sun Yat-sen University, Guangzhou 510275, Guangdong, P. R. China.

In this study, cost-efficient atmospheric pressure chemical vapor deposition has been successfully developed to produce well-aligned high-quality monocrystalline BiS nanowires. By virtue of surface strain-induced energy band reconstruction, the BiS photodetectors demonstrate a broadband photoresponse across 370.6 to 1310 nm.

View Article and Find Full Text PDF

Functioning of a tripartite lignocellulolytic microbial consortium cultivated under two shaking conditions: a metatranscriptomic study.

Biotechnol Biofuels Bioprod

March 2023

Cluster of Microbial Ecology, Groningen Institute for Evolutionary Life Sciences, University of Groningen, Groningen, The Netherlands.

Background: In a previous study, shaking speed was found to be an important factor affecting the population dynamics and lignocellulose-degrading activities of a synthetic lignocellulolytic microbial consortium composed of the bacteria Sphingobacterium paramultivorum w15, Citrobacter freundii so4, and the fungus Coniochaeta sp. 2T2.1.

View Article and Find Full Text PDF