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Purpose: To improve the quality of mean apparent propagator (MAP) reconstruction from a limited number of q-space samples.
Methods: We implement an -regularised MAP (MAPL1) to consider higher order basis functions and to improve the fit without increasing the number of q-space samples. We compare MAPL1 with the least-squares optimization subject to non-negativity (MAP), and the Laplacian-regularized MAP (MAPL). We use simulations of crossing fibers and compute the normalized mean squared error (NMSE) and the Pearson's correlation coefficient to evaluate the reconstruction quality in q-space. We also compare coefficient-based diffusion indices in the simulations and in in vivo data.
Results: Results indicate that MAPL1 improves NMSE in 1 to 3% when compared to MAP or MAPL in a high undersampling regime. Additionally, MAPL1 produces more reproducible and accurate results for all sampling rates when there are enough basis functions to meet the sparsity criterion for the regularizer. These improved reconstructions also produce better coefficient-based diffusion indices for in vivo data.
Conclusions: Adding an regularizer to MAP allows the use of more basis functions and a better fit without increasing the number of q-space samples. The impact of our research is that a complete diffusion spectrum can be reconstructed from an acquisition time very similar to a diffusion tensor imaging protocol.
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http://dx.doi.org/10.1002/mrm.28268 | DOI Listing |
Phys Med Biol
August 2025
Paul C. Lauterbur Research Center for Biomedical Imaging, Shenzhen Institutes of Advanced Technology, Chinese Academy of Sciences, Shenzhen 518055, People's Republic of China.
. Neurite orientation dispersion and density imaging (NODDI) microstructure estimation from diffusion magnetic resonance imaging (dMRI) is of great significance for the discovery and treatment of various neurological diseases. Current deep learning-based methods accelerate the speed of NODDI parameter estimation and improve the accuracy.
View Article and Find Full Text PDFMed Image Anal
May 2025
Department of Biomedical Engineering, College of Biomedical Engineering & Instrument Science, Zhejiang University, Hangzhou, Zhejiang, China; Binjiang Research Institute, Zhejiang University, Hangzhou, Zhejiang, China. Electronic address:
Diffusion MRI (dMRI) is a powerful technique for investigating tissue microstructure properties. However, advanced dMRI models are typically complex and nonlinear, requiring a large number of acquisitions in the q-space. Deep learning techniques, specifically optimization-based networks, have been proposed to improve the model fitting with limited q-space data.
View Article and Find Full Text PDFMed Phys
May 2025
Institute for Medical Imaging Technology, School of Biomedical Engineering, Shanghai Jiao Tong University, Shanghai, China.
Background: Diffusion magnetic resonance imaging (dMRI) is currently the unique noninvasive imaging technique to investigate the microstructure of in vivo tissues. To fully explore the complex tissue microstructure at sub-voxel scale, diffusion weighted (DW) images along many diffusion gradient directions are usually acquired, this is undoubtedly time consuming and inhibits their clinical applications. How to estimate the tissue microstructure only from DW images acquired with few diffusion directions remains a challenge.
View Article and Find Full Text PDFIEEE J Biomed Health Inform
February 2025
Diffusion magnetic resonance imaging (dMRI) is a non-invasive method for capturing the microanatomical information of tissues by measuring the diffusion weighted signals along multiple directions, which is widely used in the quantification of microstructures. Obtaining microscopic parameters requires dense sampling in the q space, leading to significant time consumption. The most popular approach to accelerating dMRI acquisition is to undersample the q-space data, along with applying deep learning methods to reconstruct quantitative diffusion parameters.
View Article and Find Full Text PDFBrain Sci
February 2024
Department of Medical Sciences, Section of Neurosurgery, Uppsala University, 75185 Uppsala, Sweden.
Background: Grade 2-3 diffuse gliomas (DGs) show extensive infiltration through white matter (WM) tracts. Along-tract analysis of WM tracts based on diffusion tensor tractography (DTI) can been performed to assess the microstructural integrity of WM tracts. The clinical implication of these DTI-related findings is still under debate, especially in tumor patients.
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