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Stem cell development depends on post-transcriptional regulation mediated by RNA-binding proteins (RBPs) (Zhang et al., 1997; Forbes and Lehmann, 1998; Okano et al., 2005; Ratti et al., 2006; Kwon et al., 2013). Pumilio and FBF (PUF) family RBPs are highly conserved post-transcriptional regulators that are critical for stem cell maintenance (Wickens et al., 2002; Quenault et al., 2011). The RNA-binding domains of PUF proteins recognize a family of related sequence motifs in the target mRNAs, yet individual PUF proteins have clearly distinct biological functions (Lu et al., 2009; Wang et al., 2018). The germline is a simple and powerful model system for analyzing regulation of stem cell development. Studies in uncovered specific physiological roles for PUFs expressed in the germline stem cells ranging from control of proliferation and differentiation to regulation of the sperm/oocyte decision. Importantly, recent studies started to illuminate the mechanisms behind PUF functional divergence. This review summarizes the many roles of PUF-8, FBF-1, and FBF-2 in germline stem and progenitor cells (SPCs) and discusses the factors accounting for their distinct biological functions. PUF proteins are conserved in evolution, and insights into PUF-mediated regulation provided by the model system are likely relevant for other organisms.
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http://dx.doi.org/10.3389/fcell.2020.00029 | DOI Listing |
PUF proteins (named for Pumilio and mRNA binding factor or FBF) are a family of RNA-binding proteins. FBF is a collective term for two PUF proteins, FBF-1 and FBF-2, that maintain germline stem cells. FBF binds the 3'UTR of target RNAs and together with partner proteins represses translation of mRNAs that promote differentiation.
View Article and Find Full Text PDFPLoS Pathog
July 2025
Department of Plant Pathology, Nanjing Agricultural University, Nanjing, Jiangsu, China.
Ribosome biogenesis is an essential and tightly regulated process linked to cell proliferation and growth. However, its regulatory mechanisms in oomycetes, a group of organisms with significant agricultural and ecological importance, remain unclear. In this study, we identify Puf4, a non-classical PUF (Pumilio and FBF) family RNA-binding protein that plays a conserved and crucial role in pre-rRNA processing in oomycetes.
View Article and Find Full Text PDFDev Neurobiol
April 2025
Neural Developmental Biology Lab, Department of Life Science, NIT Rourkela, Rourkela, Odisha, India.
Hypoxia, or low oxygen levels, is linked to several pathological disorders, including retinopathies. Retina being a metabolically active tissue, low oxygen levels resulted in retinal degradation. The developmental perspective of hypobaric hypoxia (HBH)-induced eye development remains elusive.
View Article and Find Full Text PDFRNA
April 2025
Department of Biochemistry, University of Wisconsin-Madison, Madison, Wisconsin 53706, USA
Like all canonical PUF proteins, FBF-2 binds to specific RNAs via tripartite recognition motifs. Here, we report that an FBF-2 mutant protein that cannot bind to RNA is nonetheless biologically active and maintains stem cells. This unexpected result challenges the conventional wisdom that RBPs must bind to RNAs to achieve biological activity.
View Article and Find Full Text PDFFEBS J
May 2025
Department of Chemistry and Biochemistry, University of California, Santa Barbara, CA, USA.
1-Aminocyclopropane-1-carboxylate synthase (ACCS) catalyzes the conversion of S-adenosyl-methionine to 1-aminocyclopropane-1-carboxylate (ACC), a rate-limiting step in ethylene biosynthesis. A gene encoding a putative ACCS protein was identified in the human genome two decades ago. It has been shown to not exhibit any canonical ACC synthase activity and its true function remains obscure.
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