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The growing field of nano nuclear magnetic resonance (nano-NMR) seeks to estimate spectra or discriminate between spectra of minuscule amounts of complex molecules. While this field holds great promise, nano-NMR experiments suffer from detrimental inherent noise. This strong noise masks to the weak signal and results in a very low signal-to-noise ratio. Moreover, the noise model is usually complex and unknown, which renders the data processing of the measurement results very complicated. Hence, spectra discrimination is hard to achieve and in particular, it is difficult to reach the optimal discrimination. In this work we present strong indications that this difficulty can be overcome by deep learning (DL) algorithms. The DL algorithms can mitigate the adversarial effects of the noise efficiently by effectively learning the noise model. We show that in the case of frequency discrimination DL algorithms reach the optimal discrimination without having any pre-knowledge of the physical model. Moreover, the DL discrimination scheme outperform Bayesian methods when verified on noisy experimental data obtained by a single Nitrogen-Vacancy (NV) center. In the case of frequency resolution we show that this approach outperforms Bayesian methods even when the latter have full pre-knowledge of the noise model and the former has none. These DL algorithms also emerge as much more efficient in terms of computational resources and run times. Since in many real-world scenarios the noise is complex and difficult to model, we argue that DL is likely to become a dominant tool in the field.
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http://dx.doi.org/10.1038/s41598-019-54119-9 | DOI Listing |
J Math Biol
September 2025
Department of Mathematics, Texas A&M University, Mailstop 3368, College Station, TX, 77843-3368, United States.
We study how environmental stochasticity influences the long-term population size in certain one- and two-species models. The difficulty is that even when one can prove that there is coexistence, it is usually impossible to say anything about the invariant probability measure which describes the coexisting species. We are able to circumvent this problem for some important ecological models by noticing that the per-capita growth rates at stationarity are zero, something which can sometimes yield information about the invariant probability measure.
View Article and Find Full Text PDFJ Math Biol
September 2025
School of Mathematical Sciences and Institute of Natural Sciences, MOE-LSC, CMA-Shanghai, Shanghai Jiao Tong University, Shanghai, China.
It has been noticed that when the waiting time distribution exhibits a transition from an intermediate time power-law decay to a long-time exponential decay in the continuous time random walk model, a transition from anomalous diffusion to normal diffusion can be observed at the population level. However, the mechanism behind the transition of waiting time distribution is rarely studied. In this paper, we provide one possible mechanism to explain the origin of such a transition.
View Article and Find Full Text PDFJ Neurosci
September 2025
Department of Neurosurgery, Perelman School of Medicine, University of Pennsylvania, Philadelphia, PA.
Human speech perception is multisensory, integrating auditory information from the talker's voice with visual information from the talker's face. BOLD fMRI studies have implicated the superior temporal gyrus (STG) in processing auditory speech and the superior temporal sulcus (STS) in integrating auditory and visual speech, but as an indirect hemodynamic measure, fMRI is limited in its ability to track the rapid neural computations underlying speech perception. Using stereoelectroencephalograpy (sEEG) electrodes, we directly recorded from the STG and STS in 42 epilepsy patients (25 F, 17 M).
View Article and Find Full Text PDFCell Rep Methods
September 2025
Department of Infectious Diseases and Public Health, Jockey Club College of Veterinary Medicine and Life Sciences, City University of Hong Kong, Hong Kong, China; Shenzhen Research Institute, City University of Hong Kong, Shenzhen, Guangdong 518057, China; Tung Biomedical Sciences Centre, City Unive
RNA modifications play crucial roles in prokaryotic cellular processes. In this study, we found that the recent advances in direct RNA sequencing have improved yield, accuracy, and signal-to-noise ratio in bacterial samples. By evaluating four current RNA modification calling models in Escherichia coli transcriptome using native and in vitro transcribed (IVT) RNA, we found the models identified most known rRNA modifications but produced false positives.
View Article and Find Full Text PDFNeural Netw
September 2025
School of Computer Science, South China Normal University, Guangzhou, 510631, Guangdong, China; School of Artificial Intelligence, South China Normal University, Foshan, 528225, Guangdong, China. Electronic address:
Data-Free Knowledge Distillation (DFKD) have achieved significant breakthroughs, enabling the effective transfer of knowledge from teacher neural networks to student neural networks without reliance on original data. However, a significant challenge faced by existing methods that attempt to generate samples from random noise is that the noise lacks meaningful information, such as class-specific semantic information. Consequently, the absence of meaningful information makes it difficult for the generator to map this noise to the ground-truth data distribution, resulting in the generation of low-quality training samples.
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