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Riparian wetland provides important ecosystem function, such as water filtration and nutrient retention. When land use change in upland from native forest to sugarcane cultivation have important impacts on carbon (C) and nutrient availability in downstream wetland systems. Here, we examined concentrations and stoichiometry of C and nutrients in total, labile, biomass pools in upland soil, riparian wetland and sediment along two distinct transects (sugarcane versus forest). Sugarcane cultivation significantly reduced total C, nitrogen (N), labile C and N in riparian soils by 69%, 62%, 33% and 45%, respectively, but significantly increased NO-N and δN by 99% and 56% in riparian areas. The presence of native forest resulted in significantly higher NH-N concentrations in downstream wetlands. Concentrations of microbial biomass C and N were generally lower, but the abundance of genes associated with nitrifiers (ammonia oxidizing bacteria and archaea) was higher in the sugarcane transect than in the forest transect. These significantly differences between two transects could be attributed to different organic inputs and biogeochemical processes associated with the different vegetation types and management practices in the upland systems. Difference in δC signature from the two transects further confirmed the significant influence of vegetation type on downstream wetlands. Sugarcane cultivation led to a consistent stoichiometric shift in both resource and microbial biomass towards lower C:P and N:P ratios across upland soils, wetlands and sediment, compared with the forest transect. The average total and microbial biomass C:N:P ratios in soil under sugarcane were 136:9:1 and 180:33:1, respectively. The average total and microbial biomass C:N:P ratios in soil under forest were 410:22:1 and 594:76:1, respectively. It is concluded that since microbial demand of C and nutrients is driven by the stoichiometry of the biomass, which is regulated by the resource stoichiometry, a change of resource induced by upland land use change leads to a shift in the stoichiometry of microbial biomass C, N and P.
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http://dx.doi.org/10.1016/j.scitotenv.2019.134127 | DOI Listing |
mSystems
September 2025
Center for Infection Biology, School of Basic Medical Sciences, Tsinghua University, Beijing, China.
Human-associated metagenomic data often contain human nucleic acid information, which can affect the accuracy of microbial classification or raise ethical concerns. These reads are typically removed through alignment to the human genome using various metagenomic mapping tools or human reference genomes, followed by filtration before metagenomic analysis. In this study, we conducted a comprehensive analysis to identify the optimal combination of alignment software and human reference genomes using benchmarking data.
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September 2025
Department of Animal Sciences, University of Illinois at Urbana-Champaign, Urbana, Illinois, USA.
A significant challenge in the field of microbiology is the functional annotation of novel genes from microbiomes. The increasing pace of sequencing technology development has made solving this challenge in a high-throughput manner even more important. Functional metagenomics offers a sequence-naive and cultivation-independent solution.
View Article and Find Full Text PDFChemSusChem
September 2025
Great Lakes Bioenergy Research Center, Wisconsin Energy Institute, University of Wisconsin-Madison, Madison, WI 53706, USA.
Spent liquors of biomass pretreatment provide a source for renewable chemical production. These liquors require treatment before being discharged; otherwise, they negatively impact the environment. Herein, spent liquors from aqueous ammonia pretreatment of poplar wood are characterized for phenolic content via liquid chromatography-mass spectrometry and nuclear magnetic resonance spectroscopy.
View Article and Find Full Text PDFFront Microbiol
August 2025
College of Plant Protection, Southwest University, Chongqing, China.
Root-knot nematodes (RKNs), particularly , are one of the most destructive plant-parasitic nematodes (PPNs) affecting crop production worldwide. Previous earlier study revealed that calcinated oyster shell powder (OSP) possessed excellent suppression of tobacco RKN disease. However, the suppression mechanism of OSP against RKNs still remains unrevealed.
View Article and Find Full Text PDFPlant Physiol Biochem
September 2025
School of Life Sciences, Hebei University, Baoding, 071002, China; Key Laboratory of Microbial Diversity Research and Application of Hebei Province, Baoding, 071002, China. Electronic address:
The accumulation of antibiotics in soil threatens agricultural ecosystems and human health. Oxytetracycline (OTC), a plant-absorbable antibiotic, generally exerts inhibitory effects on plant growth. Selenium (Se) plays a crucial role in safeguarding plants resistant to a variety of abiotic stresses.
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