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Salmonella PhoQ is a histidine kinase with a periplasmic sensor domain (PD) that promotes virulence by detecting the macrophage phagosome. PhoQ activity is repressed by divalent cations and induced in environments of acidic pH, limited divalent cations, and cationic antimicrobial peptides (CAMP). Previously, it was unclear which signals are sensed by salmonellae to promote PhoQ-mediated virulence. We defined conformational changes produced in the PhoQ PD on exposure to acidic pH that indicate structural flexibility is induced in α-helices 4 and 5, suggesting this region contributes to pH sensing. Therefore, we engineered a disulfide bond between W104C and A128C in the PhoQ PD that restrains conformational flexibility in α-helices 4 and 5. PhoQ(W104C-A128C) is responsive to CAMP, but is inhibited for activation by acidic pH and divalent cation limitation. phoQ(W104C-A128C) Salmonella enterica Typhimurium is virulent in mice, indicating that acidic pH and divalent cation sensing by PhoQ are dispensable for virulence.
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http://dx.doi.org/10.7554/eLife.06792 | DOI Listing |
J Food Sci
September 2025
College of Food Science and Technology, Huazhong Agricultural University, Wuhan, China.
Thermal processing, an effective strategy for salt reduction and preservation, is prone to causing texture deterioration (softening) in processed fruits and vegetables. Previous studies have reported that exogenous calcium and organic acids can serve as texture enhancers for plant-based foods during cooking, mitigating texture damage from thermal treatment. Therefore, this study aimed to investigate the effect of 0.
View Article and Find Full Text PDFJ Chem Theory Comput
September 2025
Université Paris Cité, CNRS, Laboratoire de Biochimie Théorique, 13 rue Pierre et Marie Curie, 75005 Paris, France.
While divalent ions are known to be involved in key biological processes such as RNA folding or DNA-histone interactions, these interactions are poorly captured in molecular dynamics simulations with empirical force fields, which suffer from strong overbinding artifacts. Hence, there is a strong need for improved descriptions of (divalent) ions in nucleic acid simulations. In this work, we explore the possibility to improve ion-binding properties of the popular Amber-OL15 force field using the Electronic Continuum Correction (ECC) approach, which includes electronic polarization through charge scaling, limited here to the phosphate backbone.
View Article and Find Full Text PDFInt J Biol Macromol
September 2025
Departamento de Química Orgánica, Facultad de Química y de Farmacia, Pontificia Universidad Católica de Chile, Santiago, Chile. Electronic address:
This study focuses on the preparation of bio-based adsorbents composed of carboxylated lignin (LC) and potassium polyacrylate (PAS) to remove Mg from aqueous solutions in the presence of Li. The successful incorporation of carboxylate groups into lignin was achieved, which was corroborated by FT-IR. Acid-base titration allowed the quantification of 11.
View Article and Find Full Text PDFBMC Genomics
August 2025
College of Horticulture, South China Agricultural University, Guangzhou, 510642, China.
The Natural Resistance-Associated Macrophage Protein (NRAMP) family consists of integral membrane transporters essential for divalent metal ion transport in plants. This study aimed to identify and characterize NRAMP genes in tomato (Solanum lycopersicum), performing genome-wide classification, and cis-elements analysis, revealing four SlNRAMP genes in the tomato genome. Phylogenetic analysis classified the four SlNRAMP proteins into two distinct groups, group A and group B.
View Article and Find Full Text PDFJ Hazard Mater
September 2025
Disposal Performance Demonstration R&D Division, Korea Atomic Energy Research Institute (KAERI), Daejeon 34057, Republic of Korea; Department of Nuclear Science and Technology, University of Science and Technology (UST), Daejeon 34113, Republic of Korea.
Understanding geochemical interactions between iodide and montmorillonite, a key mineral in radioactive waste repository barriers, is essential for assessing iodine mobility and its radiological effects on the ecosystem. Herein, we present the first experimental evidence and thermodynamic data demonstrating that iodide sorption onto montmorillonite is significantly enhanced by a calcium-associated interlayer ion-pairing mechanism under repository-relevant and environmentally realistic conditions. Our investigation is based on multiple complementary approaches, including a series of batch sorption experiments supported by thermodynamic modeling, X-ray diffraction, X-ray photoelectron spectroscopy, infrared spectroscopy, and transmission electron microscopy.
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