[Identification, modeling and simulation of key pathways underlying certain cancers].

Yi Chuan

State Key Laboratory of Proteomics, Beijing Proteome Research Center, Beijing Institute of Radiation Medicine, Beijing 100850, China.

Published: August 2011


Category Ranking

98%

Total Visits

921

Avg Visit Duration

2 minutes

Citations

20

Article Abstract

Cancer is a complex disease which greatly affects the human health. It has been widely reported that certain biological pathways play important roles in the process of tumorigenesis, tumor progression and metastasis. Identification and simulation of these pathways can help to understand the underlying mechanisms. With the deposition of huge amount of microarray data, many groups have developed a series of algorithms and models to analyze the microarray datasets for the identification and simulation of tumor related pathways. In this paper, firstly we review the recent development of these algorithms and models; then list the related software and data sources; and finally discuss the existence problems and perspectives in this field.

Download full-text PDF

Source
http://dx.doi.org/10.3724/sp.j.1005.2011.00809DOI Listing

Publication Analysis

Top Keywords

identification simulation
8
algorithms models
8
[identification modeling
4
modeling simulation
4
simulation key
4
pathways
4
key pathways
4
pathways underlying
4
underlying cancers]
4
cancers] cancer
4

Similar Publications

Background: Whilst debriefing literature offers valuable tools for healthcare education, there remains a gap in resources specifically designed for debriefing communication skills. Effective communication is fundamental to patient care, particularly during sensitive interactions. This article provides a specialised toolkit for educators to enhance communication skills debriefing, developed through synthesis of existing literature and the authors' extensive experience teaching communication skills through simulation.

View Article and Find Full Text PDF

Enhanced Cs triple-quantum excitation in solid-state NMR of Cs-bearing zeolites.

Solid State Nucl Magn Reson

August 2025

School of Chemistry, Tel Aviv University, Ramat Aviv, 6997801, Tel Aviv, Israel. Electronic address:

Geopolymers are aluminosilicate materials that exhibit effective immobilization properties for low-level radioactive nuclear waste, and more specifically for the immobilization of radioactive cesium. The identification of the cesium-binding sites and their distribution between the different phases making up the geopolymeric matrix can be obtained using solid-state NMR measurements of the quadrupolar spin Cs, which is a surrogate for the radioactive cesium species present in nuclear waste streams. For quadrupolar nuclei, acquiring two-dimensional multiple-quantum experiments allows the acquisition of more dispersed spectra when multiple sites overlap.

View Article and Find Full Text PDF

Mapping PFAS behavior via meta-analysis of soil dynamics, predictive modeling and policy integration.

Sci Total Environ

September 2025

University Hohenheim, Department of Process Analytics and Cereal Science, Stuttgart, 70599, Germany.

Per- and polyfluoroalkyl substances (PFAS) are persistent organic pollutants with increasing prevalence in agricultural soils, primarily introduced through biosolid application, wastewater irrigation, and atmospheric deposition. This review provides a meta-analysis of terminologies across 145 peer-reviewed studies, identifying inconsistency in the classification of PFAS subgroups-such as "long-chain vs. short-chain," "precursors," and "emerging PFAS"-which hinders regulatory harmonization and model calibration.

View Article and Find Full Text PDF

This research delves into the optimization of urbanization spatial patterns in Guizhou Province, China. The findings reveal that with regional coordinated development as the central objective and the optimization of urbanization spatial patterns as the strategic focus, a research framework encompassing "temporal and spatial evolution of urbanization - identification and summation of pain points and difficulties - scenario simulation and optimization - strategic goal selection" is utilized to specifically tackle issues pertaining to urbanization spatial patterns. Through the construction of diverse scenarios and rigorous research analysis, an implementation pathway is derived, advocating for "strengthening the central region of Guizhou, fostering urban agglomeration development, reinforcing developmental support points, and promoting regional coordinated development.

View Article and Find Full Text PDF

Motivation: The advent of next-generation sequencing-based spatially resolved transcriptomics (SRT) techniques has reshaped genomic studies by enabling high-throughput gene expression profiling while preserving spatial and morphological context. Understanding gene functions and interactions in different spatial domains is crucial, as it can enhance our comprehension of biological mechanisms, such as cancer-immune interactions and cell differentiation in various regions. It is necessary to cluster tissue regions into distinct spatial domains and identify discriminating genes that elucidate the clustering result, referred to as spatial domain-specific discriminating genes (DGs).

View Article and Find Full Text PDF