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Columbids (pigeons and doves) are the primary host of Trichomonas gallinae, the flagellate protozoon which causes avian trichomoniasis, a widespread, often lethal disease. Although predominantly apathogenic, the organism is paradigmatic for the study of strain-specific virulence, with some strains causing greater than 75% mortality and epizootic die-offs in wildlife populations. In recent years, research on this important emerging pathogen has been neglected and genetic variation within the parasite has not hitherto been investigated. The pink pigeon (Columba mayeri), endemic to Mauritius and one of the world's rarest pigeons, suffers high levels of nestling/fledgling mortality from trichomoniasis. As a closed oceanic island population with recorded life-history parameters for all birds, this species represents a unique resource for the study of this host-parasite interaction. To investigate genetic variation within T. gallinae in Mauritian columbids, isolates were collected from pink pigeons and another widespread species, the Madagascar turtle-dove (Streptopelia picturata). Comparison of the 5.8S region of rDNA and surrounding internally transcribed spacer regions (ITS) showed no sequence variation between isolates or with an unrelated but previously sequenced T. gallinae isolate (Genbank). This confirmed all 24 isolates as T. gallinae, and defined this section of the genome as a good species marker. In contrast, Random Amplified Polymorphic DNA (RAPD) analysis of the isolates revealed considerable genotypic variation between isolates. RAPD genotypes appeared to correlate with geographic distribution and host species, suggesting inter-species transmission and rapid host adaptation by the parasite.
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http://dx.doi.org/10.1016/j.meegid.2007.01.002 | DOI Listing |
Theor Appl Genet
September 2025
Queensland Alliance for Agriculture and Food Innovation, University of Queensland, Brisbane, Australia.
Stacking desirable haplotypes across the genome to develop superior genotypes has been implemented in several crop species. A major challenge in Optimal Haplotype Selection is identifying a set of parents that collectively contain all desirable haplotypes, a complex combinatorial problem with countless possibilities. In this study, we evaluated the performance of metaheuristic search algorithms (MSAs)-genetic algorithm (GA), differential evolution (DE), particle swarm optimisation (PSO), and simulated annealing (SA) for optimising parent selection under two genotype building (GB) objectives: Optimal Haplotype Selection (OHS) and Optimal Population Value (OPV).
View Article and Find Full Text PDFBull Cancer
September 2025
Department of Pathology and Medical Biology, Cancer Genetics Laboratory, Gustave Roussy, Villejuif, France.
The effectiveness and tolerability of medicines can vary considerably from person to person, even at the same dose. This variation is influenced by many factors, including constitutional genetic characteristics. In fact, some people have genetic variations that are common and neutral in the population, known as polymorphisms, which can affect drug metabolism or make them more susceptible to certain adverse effects.
View Article and Find Full Text PDFPoult Sci
August 2025
Department of Population Health Sciences, Faculty of Veterinary Medicine, Utrecht University, Utrecht, the Netherlands.
Colibacillosis, caused by avian pathogenic Escherichia coli (APEC), is a disease of major economic importance to the broiler industry. This study aimed to investigate genetic variation in susceptibility to colibacillosis by comparing four pure broiler breeder lines and their commercial four-way cross offspring. Three consecutive experiments were performed assessing mortality, growth retardation and mean lesion scores (MLS) after E.
View Article and Find Full Text PDFPlant J
September 2025
Université de Strasbourg, CNRS, IBMP UPR 2357, Strasbourg, France.
Trimethylation of histone H3 at lys36 (H3K36me3) promotes gene transcription and governs plant development and plant responses to environmental cues. Yet, how H3K36me3 is translated into specific downstream events remains largely uninvestigated. Here, we report that the Arabidopsis PWWP-domain protein HUA2 binds methyl-H3K36 in a PWWP motif-dependent manner.
View Article and Find Full Text PDFMol Genet Genomics
September 2025
Human Phenome Institute, MOE Key Laboratory of Contemporary Anthropology, Zhangjiang Fudan International Innovation Center, Fudan University, 825 Zhangheng Road, Shanghai, 201203, China.
Accurate variant calling is essential for next-generation sequencing (NGS)-based diagnosis of rare diseases, yet most benchmarking studies have focused on standard cell lines or trio-based samples, with limited relevance to sporadic cases. Here, we systematically compared the performance of DeepVariant and GATK HaplotypeCaller in two Chinese cohorts of patients with sporadic epilepsy (EP) and autism spectrum disorder (ASD). DeepVariant exhibited higher precision and sensitivity in detecting single nucleotide variants (SNVs), while GATK showed a distinct advantage in identifying rare variants, which are often key to understanding the genetic basis of rare diseases.
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