Publications by authors named "Yen Ning Chai"

Background: Lignin is an aromatic polymer deposited in secondary cell walls of higher plants to provide strength, rigidity, and hydrophobicity to vascular tissues. Due to its interconnections with cell wall polysaccharides, lignin plays important roles during plant growth and defense, but also has a negative impact on industrial processes aimed at obtaining monosaccharides from plant biomass. Engineering lignin offers a solution to this issue.

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Modification of lignin in feedstocks via genetic engineering aims to reduce biomass recalcitrance to facilitate efficient conversion processes. These improvements can be achieved by expressing exogenous enzymes that interfere with native biosynthetic pathways responsible for the production of the lignin precursors. In planta expression of a bacterial 3-dehydroshikimate dehydratase in poplar trees reduced lignin content and altered the monomer composition, which enabled higher yields of sugars after cell wall polysaccharide hydrolysis.

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The development of cereal crops with high nitrogen use efficiency (NUE) is a priority for worldwide agriculture. In addition to conventional plant breeding and genetic engineering, the use of the plant microbiome offers another approach to improving crop NUE. To gain insight into the bacterial communities associated with sorghum lines that differ in NUE, a field experiment was designed comparing 24 diverse lines under sufficient and deficient nitrogen (N).

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Despite growing evidence that plant growth-promoting bacteria can be used to improve crop vigor, a comparison of the different methods of delivery to determine which is optimal has not been published. An optimal inoculation method ensures that the inoculant colonizes the host plant so that its potential for plant growth-promotion is fully evaluated. The objective of this study was to compare the efficacy of three seed coating methods, seedling priming, and soil drench for delivering three bacterial inoculants to the sorghum rhizosphere and root endosphere.

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Article Synopsis
  • Plant root exudates are crucial for supporting plant growth and managing interactions with soil factors and microbes in their environment.
  • Under stress, these exudates help plants use resources more effectively and improve communication with beneficial soil microbes to cope with challenges.
  • The review highlights key root exudates that assist plants in overcoming various stresses, such as drought and nutrient deficiencies, while also discussing their impact on microbial communities in the rhizosphere.
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Article Synopsis
  • Belowground microbiomes play a key role in supporting plant growth by aiding nutrient cycling and mitigating stresses related to nitrogen limitations.
  • An analysis was conducted on the bacterial communities associated with different sweet sorghum genotypes under low and high nitrogen conditions to assess their sensitivity to nitrogen stress.
  • Results showed distinct bacterial communities in nitrogen-stress tolerant and sensitive genotypes only under high nitrogen, and certain beneficial bacteria were more abundant in tolerant plants under low nitrogen, suggesting the importance of these microbial interactions in stress management.
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Primary and secondary metabolites exuded from roots are key drivers of root-soil microbe interactions that contribute to the structure and function of microbial communities. Studies with model plants have begun to reveal the complex interactions between root exudates and soil microbes, but little is known about the influence of specialized exudates from crop plants. The aims of this work were to understand whether sorgoleone, a unique lipophilic secondary benzoquinone exuded only from the root hairs of sorghum, influences belowground microbial community structure in the field, to assess the effect of purified sorgoleone on the cultured bacteria from field soils, and to determine whether sorgoleone inhibits nitrification under field conditions.

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Much effort has been placed on developing microbial inoculants to replace or supplement fertilizers to improve crop productivity and environmental sustainability. However, many studies ignore the dynamics of plant-microbe interactions and the genotypic specificity of the host plant on the outcome of microbial inoculation. Thus, it is important to study temporal plant responses to inoculation in multiple genotypes within a single species.

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Article Synopsis
  • - This study explored how the abundance, composition, and diversity of microbial communities vary at different soil depths in corn and soybean fields in Iowa using DNA sequencing techniques.
  • - Findings showed that microbial richness and diversity decrease with increasing soil depth, while some microbial phyla became more dominant in deeper soils beyond 90 cm.
  • - Soil depth was identified as the key factor influencing microbial community structure, alongside soil properties like organic matter and water saturation, highlighting the importance of considering deeper soils in agricultural practices for improved sustainability and ecosystem health.
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Revealing the unexplored rhizosphere microbiome of plants in arid environments can help in understanding their interactions between microbial communities and plants during harsh growth conditions. Here, we report the first investigation of rhizospheric fungal and bacterial communities of , and using next-generation sequencing approaches. and grows in dry tropical and in arid conditions of Arabian Peninsula.

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