Publications by authors named "Jonay Garcia-Luis"

Zika virus (ZIKV) infection and pathogenesis are linked to the disruption of neurogenesis, congenital Zika syndrome and microcephaly by affecting neural progenitor cells. Nonstructural protein 5 (NS5) is the largest product encoded by ZIKV-RNA and is important for replication and immune evasion. Here, we studied the potential effects of NS5 on microtubules (MTs) and autophagy flux, together with the interplay of NS5 with histone deacetylase 6 (HDAC6).

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HIV-1 has evolved a plethora of strategies to overcome the cytoskeletal barrier (i.e., actin and intermediate filaments (AFs and IFs) and microtubules (MTs)) to achieve the viral cycle.

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The transactive response DNA-binding protein (TARDBP/TDP-43) is known to stabilize the anti-HIV-1 factor, histone deacetylase 6 (HDAC6). TDP-43 has been reported to determine cell permissivity to HIV-1 fusion and infection acting on tubulin-deacetylase HDAC6. Here, we studied the functional involvement of TDP-43 in the late stages of the HIV-1 viral cycle.

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The severe acute respiratory syndrome coronavirus 2 (SARS-CoV-2) infection and the associated coronavirus disease 2019 (COVID-19), which severely affect the respiratory system and several organs and tissues, and may lead to death, have shown how science can respond when challenged by a global emergency, offering as a response a myriad of rapid technological developments. Development of vaccines at lightning speed is one of them. SARS-CoV-2 outbreaks have stressed healthcare systems, questioning patients care by using standard non-adapted therapies and diagnostic tools.

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Chromosome segregation requires both the separation of sister chromatids and the sustained condensation of chromatids during anaphase. In yeast cells, cohesin is not only required for sister chromatid cohesion but also plays a major role determining the structure of individual chromatids in metaphase. Separase cleavage is thought to remove all cohesin complexes from chromosomes to initiate anaphase.

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In the absence of antiviral therapy, HIV-1 infection progresses to a wide spectrum of clinical manifestations that are the result of an entangled contribution of host, immune and viral factors. The contribution of these factors is not completely established. Several investigations have described the involvement of the immune system in the viral control.

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The transactive response DNA-binding protein (TARDBP/TDP-43) influences the processing of diverse transcripts, including that of histone deacetylase 6 (HDAC6). Here, we assessed TDP-43 activity in terms of regulating CD4+ T-cell permissivity to HIV-1 infection. We observed that overexpression of wt-TDP-43 increased both mRNA and protein levels of HDAC6, resulting in impaired HIV-1 infection independently of the viral envelope glycoprotein complex (Env) tropism.

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Cohesin is a regulator of genome architecture with roles in sister chromatid cohesion and chromosome compaction. The recruitment and mobility of cohesin complexes on DNA is restricted by nucleosomes. Here, we show that the role of cohesin in chromosome organization requires the histone chaperone FACT ('facilitates chromatin transcription') in Saccharomyces cerevisiae.

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Homologous recombination (HR) is a preferred mechanism to deal with DNA replication impairments. However, HR synapsis gives rise to joint molecules (JMs) between the nascent sister chromatids, challenging chromosome segregation in anaphase. Joint molecules are resolved by the actions of several structure-selective endonucleases (SSEs), helicases and topoisomerases.

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Article Synopsis
  • Naphthoquinones, derived from plants and microorganisms, exhibit strong biological activities by interacting with cell components, generating reactive oxygen species, and inhibiting proteins.
  • A study in the yeast Saccharomyces cerevisiae demonstrated that the toxicity of naphthoquinones lawsone and juglone is influenced by their chemical structure, with lawsone's effects heavily reliant on ROS production.
  • Some naphthoquinone derivatives disrupt mitochondrial function, with β-lapachone showing the highest potency, and the study also compared insights on their antibacterial and antitumor effects.
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Sister chromatid intertwines (SCIs), or catenanes, are topological links between replicated chromatids that interfere with chromosome segregation. The formation of SCIs is thought to be a consequence of fork swiveling during DNA replication, and their removal is thought to occur because of the intrinsic feature of type II topoisomerases (Top2) to simplify DNA topology. Here, we report that SCIs are also formed independently of DNA replication during G/M by Top2-dependent concatenation of cohesed chromatids due to their physical proximity.

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Cycling events in nature start and end to restart again and again. In the cell cycle, whose purpose is to become two where there was only one, cyclin-dependent kinases (CDKs) are the beginning and, therefore, phosphatases must play a role in the ending. Since CDKs are drivers of the cell cycle and cancer cells uncontrollably divide, much attention has been put into knocking down CDK activity.

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Downregulation of separase, condensin, Smc5/6, topoisomerase II and Cdc14 in Saccharomyces cerevisiae yields anaphase bridges formed by unresolved sister chromatids (SCBs). Here we report that the overlapping actions of the structure-selective endonucleases (SSEs) Mus81-Mms4/EME1 and Yen1/GEN1, but not Slx1-Slx4, are also essential to prevent the formation of spontaneous SCBs that depend on the homologous recombination pathway. We further show that the frequency of SCBs is boosted after mild replication stress and that they contain joint molecules enriched in non-canonical forms of the Holliday junction (HJ), including nicked-HJ (nHJ).

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Article Synopsis
  • β-Lapachone (β-lap) is an antitumor drug in trials, but its mechanism of action is unclear, particularly regarding DNA damage and the role of topoisomerases.
  • Through studies in yeast (Saccharomyces cerevisiae), researchers found that oxidative stress, rather than direct DNA or microtubule damage, is primarily responsible for β-lap's toxicity.
  • Key proteins related to antioxidant response and stress tolerance, such as Yap1, Snf1, and Hog1, are crucial in protecting against β-lap, indicating that the drug causes cell death mainly through reactive oxygen species (ROS) generation.
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The only canonical Holliday junction (HJ) resolvase identified in eukaryotes thus far is Yen1/GEN1. Nevertheless, Yen1/GEN1 appears to have a minor role in HJ resolution, and, instead, other structure-specific endonucleases (SSE) that recognize branched DNA play the leading roles, Mus81-Mms4/EME1 being the most important in budding yeast. Interestingly, cells tightly regulate the activity of each HJ resolvase during the yeast cell cycle.

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Article Synopsis
  • A new series of arylnaphthalimides were created to reduce the harmful effects of N-acetylated metabolites from amonafide, a cancer-fighting drug known for intercalating DNA and inhibiting Topoisomerase II.
  • The new compounds were tested for their effectiveness against two tumor cell lines, their ability to inhibit Topoisomerase II, and their interaction with DNA using both laboratory assays and modeling techniques.
  • Results indicated that the newly developed 5-arylsubstituted naphthalimides not only maintained the beneficial properties of amonafide but also enhanced its biological activities.
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The resolution of chromosomes during anaphase is a key step in mitosis. Failure to disjoin chromatids compromises the fidelity of chromosome inheritance and generates aneuploidy and chromosome rearrangements, conditions linked to cancer development. Inactivation of topoisomerase II, condensin, or separase leads to gross chromosome nondisjunction.

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Article Synopsis
  • β-Lapachone (β-lap) is an effective antitumor agent that causes DNA damage through oxidation and alkylation.
  • Research showed that β-lap does not activate the homologous recombination (HR) DNA repair pathway in yeast, unlike its similar compound menadione and the alkylating agent methyl methanesulfonate (MMS).
  • The study's findings were based on several observations, including mutant sensitivity profiles and lack of DNA repair activity, suggesting that β-lap may damage DNA in a way that does not rely on HR for repair.
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