Publications by authors named "Huisheng Li"

Advancements in spatial transcriptomics have transformed our understanding of organ function and tissue microenvironment. However, accurately identifying spatial domains to depict genome heterogeneity and cellular interactions remains a challenge. In this study, we propose EnSDD (Ensemble-learning for Spatial Domain Detection), a method that ingeniously integrates eight state-of-the-art spatial domain detection methods to automatically identify spatial domains.

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Astaxanthin (ATX) is known for its antioxidant and anti-inflammation functions yet its role in cancers requires more research. This study is aimed to reveal the potential synergetic effect of ATX with ionizing radiation (IR) in OSCC. Cell survival was measured after human OSCC cells including CAL27 and SCC9, and normal human oral keratinocytes (NHOKs) were treated with different concentrations of ATX for 24 h.

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Background: Exosomes derived from oral squamous cell carcinoma (OSCC) could modulate OSCC development. This study aimed to explore effects of exosome-mediated lncRNA PART1 on OSCC cells.

Methods: This study was performed in Tianjin Medical University Cancer Institute from February 2021 to March 2022.

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Article Synopsis
  • Spatially resolved gene expression profiles are crucial for understanding how different cell types are distributed in tissues, but many existing techniques can't analyze individual cells and instead measure mixed populations.
  • This study proposes a new method called EnDecon, which combines various deconvolution techniques to more accurately predict cell-type compositions from spatial transcriptomics data, outperforming other methods in simulations.
  • EnDecon has been tested on real datasets and effectively identifies and maps multiple cell types, revealing important spatial patterns in tissue architecture, with the source code available online for further research.
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Cluster of Differentiations 73 (CD73)/ecto-5'-nucleotidase (NT5E) is a novel type of immune molecular marker expressed on many tumor cells and involved in regulating the essential immune functions and affecting the prognosis of cancer patients. However, it is not clear how the NT5E is linked to the infiltration levels of the immune cells in pan-cancer patients and their final prognosis. This study explores the role of NT5E in 33 tumor types using GEPIA, TIMER, Oncomine, BioGPS databases, and several bioinformatic tools.

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Article Synopsis
  • The identification of differentially expressed genes in single-cell RNA-sequencing (scRNA-seq) is vital, but existing methods yield inconsistent results due to varying assumptions and data structures.
  • The authors introduce scDEA, an ensemble learning approach that combines P-values from 12 distinct analysis methods, aiming for more reliable results in gene expression detection.
  • Experimental findings indicate that scDEA significantly outperforms existing methods, making it a useful tool for biologists, bioinformaticians, and data scientists working with scRNA-seq data.
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The definition of substernal goiter (SG) is based on variable criteria, leading to considerable variations in the reported incidence (from 0.2% to 45%). The peri- and postoperative complications are higher in total thyroidectomy (TT) for SG than that for cervical goiter.

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In this study, a polysaccharide (ACP-a1), with a molecular weight of 3.2×10(5)Da, was successfully purified and identified from the roots of Aconitum coreanum (Lèvl.) Rapaics.

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In the title mol-ecule, C(32)H(52)B(2)O(4)S(2), the two thio-phene rings are twisted by 67.34 (2)°. In the crystal, weak C-H⋯O hydrogen bonds link mol-ecules related by translation along the a axis into chains.

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Diethyl [4-(1,3-benzothia-zol-2-yl)benz-yl]phospho-nate.

Acta Crystallogr Sect E Struct Rep Online

November 2010

In the title mol-ecule, C(18)H(20)NO(3)PS, the benzene ring and the benzothia-zole mean plane are almost coplanar, forming a dihedral angle of 2.29 (2)°. The two ethyl groups are each disordered over two conformations in ratios that refined to 0.

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1,4-Bis(4-chloro-phen-yl)butane-1,4-dione.

Acta Crystallogr Sect E Struct Rep Online

November 2008

The mol-ecule of title compound, C(16)H(12)Cl(2)O(2), is centrosymmetric. Thus, the asymmetric unit comprises two half-mol-ecules. The two benzene rings are coplanar in each independent molecule (dihedral angles = 0°).

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(m-Phenyl-enedimethyl-ene)diammonium dichloride.

Acta Crystallogr Sect E Struct Rep Online

October 2008

The asymmetric unit of the title compound, C(8)H(14)N(2) (2+)·2Cl(-), contains one and a half of the dications and three chloride anions. The half molecule is completed by crystallographic twofold symmetry with two C atoms lying on the rotation axis. The two ammonium groups in each cation adopt a trans conformation with respect ot the benzene ring.

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The title compound, C(15)H(10)ClNO(4), belongs to the class of 1,2-diketones, which have important applications in both synthetic organic chemistry and supra-molecular chemistry. A dihedral angle of 9.03 (1)° is found between the mean planes of the two benzene rings.

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