Publications by authors named "Andrey A Shabalin"

Objective: Genetics contributes to elevated body mass index (BMI) in youth. Adolescents experiencing interpersonal stressors (eg, peer victimization or parental criticism) may additionally be at a heightened risk for developing high BMI. However, few studies have examined the additive contributions of genetic factors and interpersonal stressors to BMI.

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Personality traits describe stable differences in how individuals think, feel, and behave and how they interact with and experience their social and physical environments. We assemble data from 46 cohorts including 611K-1.14M participants with European-like and African-like genomes for genome-wide association studies (GWAS) of the Big Five personality traits (extraversion, agreeableness, conscientiousness, neuroticism, and openness to experience), and data from 51K participants for within-family GWAS.

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Polygenic indexes (PGIs) - DNA-based phenotype predictors for individual phenotypes - have become essential tools across the biomedical and social sciences. We introduce Version 2 of the Polygenic Index Repository, which expands the number of phenotypes from 47 to 61, increases the number of participating datasets from 11 to 20, and adopts a more consistent and improved methodology for PGI construction. For 16 phenotypes, we leverage summary statistics from an updated GWAS meta-analysis with greater statistical power compared to the original release, thereby improving the PGI's predictive power.

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  • * A genome-wide association meta-analysis of nearly 122,000 ANX cases revealed 58 significant genetic variants and 66 related genes, with many of these findings replicated in a larger independent sample.
  • * The findings indicate a substantial genetic overlap between ANX and other conditions like depression, emphasizing GABAergic signaling as a key mechanism, thereby enhancing our understanding of the genetic basis of ANX for future research.
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Background: Adolescents with elevated body mass index (BMI) are at an increased risk for depression and body dissatisfaction. Type 2 diabetes (T2D) is an established risk factor for depression. However, shared genetic risk between cardiometabolic conditions and mental health outcomes remains understudied in youth.

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Background: Offspring of depressed mothers have elevated risk of developing depression because they are exposed to greater stress. While generally assumed that youth's increased exposure to stress is due to the environmental effects of living with a depressed parent, youth's genes may influence stress exposure through gene-environment correlations (rGEs). To understand the relationship between risk for depression and stress, we examined the effects of polygenic risk for depression on youth stress exposure.

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Background: Polygenic risk scores (PRSs) capture genetic vulnerability to psychiatric conditions. However, PRSs are often associated with multiple mental health problems in children, complicating their use in research and clinical practice. The current study is the first to systematically test which PRSs associate broadly with all forms of childhood psychopathology, and which PRSs are more specific to one or a handful of forms of psychopathology.

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Background: Genetic factors contribute to individual differences in the severity of coronavirus disease 2019 (COVID-19). A portion of genetic predisposition can be captured using polygenic risk scores (PRS). Relatively little is known about the associations between PRS and COVID-19 severity or post-acute COVID-19 in community-dwelling individuals.

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We develop a computationally efficient alternative, TwinEQTL, to a linear mixed-effects model for twin genome-wide association study data. Instead of analyzing all twin samples together with linear mixed-effects model, TwinEQTL first splits twin samples into 2 independent groups on which multiple linear regression analysis can be validly performed separately, followed by an appropriate meta-analysis-like approach to combine the 2 nonindependent test results. Through mathematical derivations, we prove the validity of TwinEQTL algorithm and show that the correlation between 2 dependent test statistics at each single-nucleotide polymorphism is independent of its minor allele frequency.

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  • Gene regulation is essential for cellular function, with ATAC-seq emerging as a key method to study the epigenome and transcription mechanisms.
  • The study explored insulin signaling in Drosophila S2 cells, finding correlations between chromatin accessibility and gene expression changes.
  • The results indicate that insulin-induced chromatin modifications identified by ATAC-seq can be linked to specific enhancer regions that promote reporter gene expression.
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  • Major depressive disorder (MDD) and opioid use disorder (OUD) are common genetic disorders that often occur together and can be fatal.
  • A study with 144 healthy participants examined the relationship between genetic risk for these disorders and the behavior of the µ-opioid receptor (MOR) under stress.
  • Findings showed that MDD and OUD genetic risks were linked to how the opioid system activates during stress, particularly in females, indicating a potential pathway for combined treatment approaches.
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  • This study examined the genetic factors behind internalizing symptoms (like anxiety and depression) in children and adolescents through extensive genome-wide association studies (GWAS) across 22 groups, involving over 64,000 participants aged 3 to 18.
  • The findings showed no significant genetic markers for overall internalizing symptoms, with low heritability rates, but highlighted that self-reported symptoms had the highest genetic influences and remained consistent from childhood to adolescence.
  • The research established strong genetic links between childhood internalizing symptoms and various adult mental health issues, suggesting that understanding these genetic correlations could help explain the continuity and overlap of psychiatric problems from childhood to adulthood.
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Schizophrenia has a multifactorial etiology, involving a polygenic architecture. The potential benefit of whole genome sequencing (WGS) in schizophrenia and other psychotic disorders is not well studied. We investigated the yield of clinical WGS analysis in 251 families with a proband diagnosed with schizophrenia (N = 190), schizoaffective disorder (N = 49), or other conditions involving psychosis (N = 48).

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  • Childhood aggressive behavior (AGG) is significantly heritable, with around 50% of its variation attributed to genetics, as shown in a study analyzing data from over 87,000 children aged 1.5 to 18 years; however, no genome-wide significant SNPs were identified.* -
  • Three significant genes (ST3GAL3, PCDH7, and IPO13) linked to educational traits were found, and genetic analysis revealed moderate to strong correlations between AGG and various psychiatric traits, with notable weak correlations concerning teacher assessments.* -
  • The research also showed negative genetic correlations of aggression with cognitive abilities and age at first birth, alongside strong correlations with smoking behaviors, highlighting complex genetic interactions within childhood aggression.*
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Background: Genetics hold promise of predicting long-term post-traumatic stress disorder (PTSD) outcomes following trauma. The aim of the current study was to test whether six hypothesized polygenic risk scores (PRSs) developed to capture genetic vulnerability to psychiatric conditions prospectively predict PTSD onset, severity, and 18-year course after trauma exposure.

Methods: Participants were 1490 responders to the World Trade Center (WTC) disaster (mean age at 9/11 = 38.

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