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The gas-phase structures of dibenzo-24-crown-8 (DB24C8) and dinaphtho-24-crown-8 (DN24C8) complexes with divalent metal ions (Mg, Ca, Sr, Ba, Fe, Ni, and Zn) were investigated by cryogenic ion mobility-mass spectrometry (IM-MS) in combination with density functional theory calculations. Several complexes, particularly those of DN24C8, exhibited multiple coexisting conformers. DFT-optimized structures were classified based on the relative orientation of the two aromatic rings in the crown ether. For most metal ions, conformers, with the aromatic rings closely stacked, were stabilized in the DN24C8 complexes by enhanced π-π interactions, whereas conformers, with the aromatic rings laterally displaced, were favored in the DB24C8 complexes due to intramolecular electrostatic repulsion. In contrast, conformers, with the aromatic rings widely separated, were strongly preferred in the Ni complexes, which was attributed to / isomerism in the octahedral coordination. These results highlight the important roles of ion size, charge, and coordination geometry in determining the conformational preferences of crown ether complexes in the gas phase, providing molecular-level insight into ion selectivity.
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http://dx.doi.org/10.1021/acs.jpca.5c04497 | DOI Listing |
Mol Divers
September 2025
Department of Biotechnology, National Institute of Technology Raipur, Raipur, Chhattisgarh, 492001, India.
Traditional drug discovery methods like high-throughput screening and molecular docking are slow and costly. This study introduces a machine learning framework to predict bioactivity (pIC₅₀) and identify key molecular properties and structural features for targeting Trypanothione reductase (TR), Protein kinase C theta (PKC-θ), and Cannabinoid receptor 1 (CB1) using data from the ChEMBL database. Molecular fingerprints, generated via PaDEL-Descriptor and RDKit, encoded structural features as binary vectors.
View Article and Find Full Text PDFJ Phys Chem A
September 2025
Department of Chemistry, Graduate School of Science, Tohoku University, Sendai 980-8578, Japan.
The gas-phase structures of dibenzo-24-crown-8 (DB24C8) and dinaphtho-24-crown-8 (DN24C8) complexes with divalent metal ions (Mg, Ca, Sr, Ba, Fe, Ni, and Zn) were investigated by cryogenic ion mobility-mass spectrometry (IM-MS) in combination with density functional theory calculations. Several complexes, particularly those of DN24C8, exhibited multiple coexisting conformers. DFT-optimized structures were classified based on the relative orientation of the two aromatic rings in the crown ether.
View Article and Find Full Text PDFChempluschem
September 2025
Faculty of Chemistry, University of Warsaw, Pasteura 1, Warsaw, PL 02-093, Poland.
The design, synthesis, and characterization of a series of supramolecular receptors based on electron-deficient aromatic systems capable of engaging in anion-π interactions are reported. Receptors 1 and 3 combine an electron-poor aromatic scaffold with a cation-binding crown ether unit. Binding studies monitored by H NMR titrations in acetonitrile revealed that these receptors exhibit enhanced affinity for bromide anions in the presence of sodium cations, indicating cooperative ion-pair recognition.
View Article and Find Full Text PDFMar Pollut Bull
September 2025
Department of Chemistry, Kyungpook National University, Daegu 41566, Republic of Korea; Mass Spectrometry Based Converging Research Institute, Daegu 41566, Republic of Korea. Electronic address:
Polyethylene terephthalate (PET) is one of the most widely used plastics, particularly in packaging and textiles. Although PET is widely used in consumer products, only 10-28 % is recycled. Most PET waste is not properly managed.
View Article and Find Full Text PDFAngew Chem Int Ed Engl
September 2025
Division of Chemistry and Biological Chemistry, School of Chemistry, Chemical Engineering and Biotechnology, Nanyang Technological University, 21 Nanyang Link, Singapore, 637371, Singapore.
Rapid and accurate identification of harmful plasticizer analogs in their native matrix is crucial for contaminant monitoring across industries. Surface-enhanced Raman scattering (SERS) shows promise for detecting structurally similar analogs but faces challenges like subtle receptor signal changes and distortion with weakly adsorbing plasticizer analytes. We address these limitations by integrating direct and indirect SERS to capture intrinsic Raman signals and receptor-analyte interactions, achieving 100% classification accuracy eight plasticizer analogs and multiplex quantification of three major plasticizers extracted from canola oil with < 5% predictive errors at a limit of detection (LOD) of 0.
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