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Purpose: Connectivity analyses of fluorodeoxyglucose positron emission tomography (FDG-PET) static images provide a valuable means of investigating brain network organization by capturing metabolic activity at rest. Graph theory is emergently applied to model these networks at individual level; however, the choice of graph construction method can significantly impact analytical outcomes.
Methods: In this study, we systematically evaluate and compare methods for building individual graphs from FDG-PET images in healthy control subjects. Specifically, we assess five methods, categorized into mean-based graphs and probability density function (PDF)-based graphs, using two criteria: structural similarity between individual and group-level graphs, and their hub topology structure analysis.
Results: Our findings indicate that the Effect Size-based (ES) method best preserves group-level graph structure, achieving 98.9% similarity for the averaged graph while also maintaining around 84% similarity for individual graphs. Among PDF-based approaches, the Wasserstein (WA) method, with its adaptability in PDF-based settings, provides the highest similarity across both averaged (82.5%) and individual (79.1%) graphs, with its adaptive in PDF-settings, making it the most effective for multi-scale network analysis. Meanwhile, Dynamic Time Warping (DTW) captures the highest individual variability, as reflected by its largest variation among individual graphs (11.5%).
Conclusion: This analysis highlights the unique strengths and limitations of each method, emphasizing the critical importance of careful method selection tailored to specific research objectives. Additionally, our study suggests a framework for selecting the appropriate methods, with implications for further both research and clinical applications.
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http://dx.doi.org/10.1007/s00259-025-07462-1 | DOI Listing |
J Org Chem
September 2025
State Key Laboratory of Fine Chemicals, School of Chemical Engineering, Ocean and Life Sciences, Dalian University of Technology, Panjin 124221, P. R. China.
The Buchwald-Hartwig (B-H) reaction graph, a novel graph for deep learning models, is designed to simulate the interactions among multiple chemical components in the B-H reaction by representing each reactant as an individual node within a custom-designed reaction graph, thereby capturing both single-molecule and intermolecular relationship features. Trained on a high-throughput B-H reaction data set, B-H Reaction Graph Neural Network (BH-RGNN) achieves near-state-of-the-art performance with an score of 0.971 while maintaining low computational costs.
View Article and Find Full Text PDFCien Saude Colet
August 2025
Departamento de Medicina Social, Faculdade de Medicina de Ribeirão Preto, Universidade de São Paulo. Ribeirão Preto SP Brasil.
The present study aimed to investigate the relationship between screen time and the frequency of consumption of ultra-processed foods (UPF) in overweight pregnant women. This was a cross-sectional study that used baseline data from a randomized clinical trial conducted in the Primary Health Care (PHC) network of a Brazilian municipality between 2018 and 2021. Data from the Food Consumption Markers form were used.
View Article and Find Full Text PDFRev Bras Enferm
September 2025
Universidade do Estado do Amazonas. Manaus, Amazonas, Brazil.
Objectives: to develop a mobile application prototype using Artificial Intelligence (AI) to predict and support the diagnosis of pulmonary tuberculosis in children - TB Kids.
Methods: technological development research of the prototyping type, based on the Rational Unified Process model and its four stages: conception, elaboration, construction and transition. The development of the TB Kids prototype took place from November 2022 to July 2023.
IEEE J Biomed Health Inform
September 2025
The tumor microenvironment is a dynamic eco system where cellular interactions drive cancer progression. However, inferring cell-cell communication from non-spatial scRNA-seq data remains challenging due to incomplete li gand-receptor databases and noisy cell type annotations. H ere, we propose scGraphDap, a graph neural network frame work that integrates functional state pseudo-labels and graph structure learning to improve both cell type annotation an d CCC inference.
View Article and Find Full Text PDFiScience
September 2025
Max Planck Institute of Psychiatry, 80804 Munich, Germany.
Isoform-specific expression patterns have been linked to stress-related psychiatric disorders such as major depressive disorder (MDD). To further explore their involvement, we constructed co-expression networks using total gene expression (TE) and isoform ratio (IR) data from affected ( = 210, 81% with depressive symptoms) and unaffected ( = 95) individuals. Networks were validated using advanced graph generation methods.
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