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The ( ) mutation first described by Morgan and Bridges in 1915 has adult visible phenotypes in wing posture and vein formation. We have mapped to a genomic region within the ( ) gene that houses the cis-regulatory elements that control expression of the Iroquois Complex genes ( ) and ( ) in the wing hinge and wing veins. Sequence analysis of the allele has identified a gtwin retrotransposon containing su(Hw) insulator binding sites within this region of . We find that mutations in suppress the phenotype, providing a potential mechanism for the insertion to affect the function of the Iroquois Complex.
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http://dx.doi.org/10.17912/micropub.biology.001704 | DOI Listing |
MicroPubl Biol
July 2025
Department of Biology, Duke University, Durham, North Carolina, United States.
The ( ) mutation first described by Morgan and Bridges in 1915 has adult visible phenotypes in wing posture and vein formation. We have mapped to a genomic region within the ( ) gene that houses the cis-regulatory elements that control expression of the Iroquois Complex genes ( ) and ( ) in the wing hinge and wing veins. Sequence analysis of the allele has identified a gtwin retrotransposon containing su(Hw) insulator binding sites within this region of .
View Article and Find Full Text PDFPLoS Biol
August 2024
Department of Integrative Biology, University of Wisconsin-Madison, Madison, Wisconsin, United States of America.
The chelicerate body plan is distinguished from other arthropod groups by its division of segments into 2 tagmata: the anterior prosoma ("cephalothorax") and the posterior opisthosoma ("abdomen"). Little is understood about the genetic mechanisms that establish the prosomal-opisthosomal (PO) boundary. To discover these mechanisms, we created high-quality genomic resources for the large-bodied spider Aphonopelma hentzi.
View Article and Find Full Text PDFProteins
February 2024
School of Biomedical Sciences, Faculty of Health, Queensland University of Technology, Brisbane, Queensland, Australia.
Iroquois Homeobox 4 (IRX4) belongs to a family of homeobox TFs having roles in embryogenesis, cell specification, and organ development. Recently, large scale genome-wide association studies and epigenetic studies have highlighted the role of IRX4 and its associated variants in prostate cancer. No studies have investigated and characterized the structural aspect of the IRX4 homeodomain and its potential to bind to DNA.
View Article and Find Full Text PDFNat Commun
August 2023
Department of Medical Oncology, Dana-Farber Cancer Institute, Boston, MA, 02215, USA.
To date, single-nucleotide polymorphisms (SNPs) have been the most intensively investigated class of polymorphisms in genome wide associations studies (GWAS), however, other classes such as insertion-deletion or multiple nucleotide length polymorphism (MNLPs) may also confer disease risk. Multiple reports have shown that the 5p15.33 prostate cancer risk region is a particularly strong expression quantitative trait locus (eQTL) for Iroquois Homeobox 4 (IRX4) transcripts.
View Article and Find Full Text PDFCells
December 2022
Nantes Université, CHU Nantes, CNRS, INSERM, l'institut du thorax, F-44000 Nantes, France.
Human heart development is governed by transcription factor (TF) networks controlling dynamic and temporal gene expression alterations. Therefore, to comprehensively characterize these transcriptional regulations, day-to-day transcriptomic profiles were generated throughout the directed cardiac differentiation, starting from three distinct human- induced pluripotent stem cell lines from healthy donors (32 days). We applied an expression-based correlation score to the chronological expression profiles of the TF genes, and clustered them into 12 sequential gene expression waves.
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