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Quantifying the dynamic interplay between p53 and Mdm2 is critical for uncovering their roles in cancer suppression and therapeutic targeting. Experimental studies have shown that p53-Mdm2 interactions exhibit oscillatory behavior in response to DNA damage. However, several mathematical models fail to sustain these oscillations or do not fit well with the experimental data, instead converging to constant steady-state values of p53 and Mdm2, which is unrealistic. In this study, we develop a simple yet robust ordinary differential equation model that accurately quantifies different stable periodic solutions (limit cycles) for p53-Mdm2 dynamics. Specifically, using a two-step numerical calibration algorithm, we validate the model against four experimental datasets. The calibrated model fits the data well and reveals two distinct oscillatory regimes: one in which Mdm2 oscillates with an amplitude 2.67 times greater than that of p53, suggesting a strongly amplified feedback response, and another in which Mdm2 exhibits variable but consistently lower-amplitude oscillations relative to p53. The observed variability in oscillatory behavior may support tumor suppression by enabling context-dependent activation of p53 targets, allowing cells to fine-tune stress responses.
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http://dx.doi.org/10.1016/j.biosystems.2025.105540 | DOI Listing |
bioRxiv
August 2025
Latin American Brain Health Institute (BrainLat), Universidad Adolfo Ibañez, Santiago, Chile.
Whole-brain models are valuable tools for understanding brain dynamics in health and disease by enabling the testing of causal mechanisms and identification of therapeutic targets through dynamic simulations. Among these models, biophysically inspired neural mass models have been widely used to simulate electrophysiological recordings, such as MEG and EEG. However, traditional models face limitations, including susceptibility to hyperexcitation, which constrains their ability to capture the full richness of neural dynamics.
View Article and Find Full Text PDFNeural Netw
August 2025
National School of Engineering, Control and Energy Management Laboratory, University of Sfax, BP 1173, Sfax, 3038, Tunisia; Higher Institute of Applied Sciences and Technology of Kairouan, University of Kairouan, Kairouan, Tunisia. Electronic address:
This paper introduces Tempered Fractional Gradient Descent (TFGD), a novel optimization framework that synergizes fractional calculus with exponential tempering to enhance gradient-based learning. Traditional gradient descent methods often suffer from oscillatory updates and slow convergence in high-dimensional, noisy landscapes. TFGD addresses these limitations by incorporating a tempered memory mechanism, where historical gradients are weighted by fractional coefficients |w|=(αj) and exponentially decayed via a tempering parameter λ.
View Article and Find Full Text PDFJ Phys Chem Lett
September 2025
College of Chemical Engineering, China University of Mining and Technology, Xuzhou 221116, People's Republic of China.
This study focuses on the electro-oxidation of isopropanol on low-index platinum single-crystal surfaces─Pt(111), Pt(110), and Pt(100)─in acidic electrolytes containing either sulfuric acid (HSO) or perchloric acid (HClO). The aim is to elucidate the roles of crystallographic orientation and electrolyte anions in the reaction pathway and associated dynamic instabilities. While conventional voltammetric and spectroscopic techniques provide insights into reaction products and adsorbed intermediates, galvanostatic experiments are employed here to probe the emergence of potential oscillations, which serve as sensitive indicators of nonsteady-state surface processes.
View Article and Find Full Text PDFPRX Life
July 2025
Department of Physics, Oregon State University, Corvallis, Oregon 97331, USA.
To maintain normal functionality, it is necessary for a multicellular organism to generate robust responses to external temporal signals. However, the underlying mechanisms to coordinate the collective dynamics of cells remain poorly understood. Here, we study the calcium activity of biological neuron networks excited by periodic ATP stimuli.
View Article and Find Full Text PDFPhys Rev E
July 2025
Ecole Normale Supérieure PSL University, Group for Neural Theory, Laboratoire des Neurosciences Cognitives et Computationnelles, Paris, France.
Inhibitory interneurons, ubiquitous in the central nervous system, form networks connected through both chemical synapses and gap junctions. These networks are essential for regulating the activity of principal neurons, especially by inducing temporally patterned dynamic states. Here, we aim to understand the dynamic mechanisms that allow for synchronisation to arise in networks of electrically and chemically coupled interneurons.
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