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In vitro mRNA transcription requires a 5' cap and a 3' poly(A) tail to enable protein expression in eukaryotic cells-features critical to the success of mRNA vaccines and gene therapies. However, these modifications add complexity and cost to industrial-scale production. We here developed a novel RNA construct that replaces the 5' cap and untranslated region (UTR) with the internal ribosome entry site (IRES) from encephalomyocarditis virus (EMCV), and substitutes the 3' poly(A) tail with a replication-dependent histone stem-loop (SL) structure. Through systematic screening of various 3' UTRs and SL structures, we identified the β-globin 3' UTR combined with the Homo sapiens histone SL as the optimal configuration for efficient translation. The resulting mRNA construct achieved comparable expression efficiency and stability to conventional capped and polyadenylated mRNAs (p > 0.05), without requiring either a cap or poly(A) tail. This innovative system offers a streamlined, cost-effective platform for mRNA production, while offering a promising technological advancement for future applications in mRNA vaccines and gene therapy.
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http://dx.doi.org/10.1016/j.ijbiomac.2025.146218 | DOI Listing |
Gigascience
January 2025
Department of Microbiology and Immunology, University of Melbourne at The Peter Doherty Institute for Infection and Immunity, Melbourne, VIC, 3000, Australia.
Polyadenylation is a dynamic process that is important in cellular physiology, which has implications in messenger RNA decay rates, translation efficiency, and isoform-specific regulation. Oxford Nanopore Technologies direct RNA sequencing provides a strategy for sequencing the full-length RNA molecule and analysis of the transcriptome. Several tools are currently available for poly(A) tail length estimation, including well-established methods like tailfindr and nanopolish, as well as more recent deep learning models like Dorado.
View Article and Find Full Text PDFAdv Sci (Weinh)
September 2025
CAS Key Laboratory for Biological Effects of Nanomaterials and Nanosafety, National Center for Nanoscience and Technology, Chinese Academy of Sciences, Beijing, 100190, China.
The rapid adoption of mRNA-based vaccines highlights the critical need for on-site quality control (QC) methods, particularly in low-income countries with decentralized manufacturing. Existing techniques, such as liquid chromatography-mass spectrometry (LC-MS) and capillary electrophoresis (CE), are resource-intensive, requiring specialized equipment and expertise. To address this, a comprehensive lateral flow strip assay (LFSA) has been developed to evaluate key mRNA quality attributes-5' capping efficiency, integrity, and lipid nanoparticles (LNPs) encapsulation efficiency.
View Article and Find Full Text PDFJ Am Chem Soc
September 2025
Department of Chemistry, Stanford University, Stanford, California 94305, United States.
The potential of coding RNAs as a general therapeutic modality is limited by their short intracellular lifetime. Here, we investigate the effects of localized post-transcriptional RNA modification on protein expression over time. While 2'-OH acylation of GFP RNA with stable adducts in the protein-coding region strongly suppressed protein expression, acylation at the poly(A) tail extended translation duration, with protein output increased by up to 8-fold at 36 h.
View Article and Find Full Text PDFRSC Chem Biol
August 2025
Innovation Center, Research Division Kyowa Kirin Co., Ltd. 3-6-6 Asahi, Machida Tokyo 194-8533 Japan
The poly(A) tail plays a crucial role in mRNA stability and translation efficiency. Chemical modification of the poly(A) tail is a promising approach for stabilizing mRNA against deadenylation. In this study, we investigated the effect of poly(A) chemical modifications using phosphorothioate (PS), 2'-fluoro (2'-F), 2'--methyl (2'-OMe), and 2'--methoxyethyl (2'-MOE) modifications.
View Article and Find Full Text PDFGenes Dev
August 2025
Department of Biology, Emory College of Arts and Sciences, Atlanta, Georgia 30322, USA
Polyadenylation of mRNA is a key step in post-transcriptional regulation. In this issue of , Gabs and colleagues (doi:10.1101/gad.
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