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Development of a CRISPR/Cas9 genome editing toolbox for and its application in hypoxanthine biosynthesis. | LitMetric

Development of a CRISPR/Cas9 genome editing toolbox for and its application in hypoxanthine biosynthesis.

Synth Syst Biotechnol

Guangdong Key Laboratory of Fermentation and Enzyme Engineering, School of Biology and Biological Engineering, South China University of Technology, Guangzhou, 510006, PR China.

Published: December 2025


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Article Abstract

, a high-GC Gram-positive bacterium with significant industrial potential, has faced limitations due to the lack of efficient genetic tools. In this study, we developed a CRISPR/Cas9-based genome editing platform specifically tailored for . First, electroporation efficiency was optimized to 1.81 ± 0.16 × 10 CFU (colony forming units)/μg plasmid DNA through medium selection, pulse parameter adjustments (2.5 kV, 2 pulses), and concentration optimization of cell wall-weakening agents (3.0 % glycine, 0.25 % isoniazid). Three functional shuttle vectors (p99E-pCG1, p19-Kan, p19-Spe) were constructed, enabling stable heterologous gene expression. By engineering a tightly regulated Cas9 expression system (P promoter with dual LacO∗ operators), we achieved high-efficiency genome editing, with deletion efficiencies of 81.2-98.6 % for 1.7-50 kb fragments and insertion efficiencies of 27.5-65.2 % for 1-5 kb fragments. CRISPR/Cas9-assisted ssDNA recombineering facilitated single/triple nucleotide changes with >90 % efficiency. Applying this toolbox, we engineered for hypoxanthine biosynthesis by combining deletion with integration of heterologous feedback-resistant and endogenous deregulation ( ), achieving a titer of 0.047 g/L. This study establishes a robust genetic platform for , accelerating its industrial application in the production of biochemicals and biofuels.

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Source
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC12271617PMC
http://dx.doi.org/10.1016/j.synbio.2025.06.010DOI Listing

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