98%
921
2 minutes
20
Background: Asthma is a heterogeneous chronic inflammatory disease of the airway, and its development is the result of genetic factors, environmental factors, immune dysfunction, and other factors. This study aimed to identify biomarkers of asthma.
Methods: A differential gene expression (DGE) analysis and a weighted gene co-expression network analysis (WGCNA) were conducted to identify the asthma-related genes in the GSE67472 dataset, and these genes were intersected with immune genes from the Immuport database to identify the asthma-associated immune genes. Least absolute shrinkage and selection operator (LASSO) regression was used to identify the key asthma-associated immune genes, and receiver operating characteristic (ROC) curves were used to assess the diagnostic potential of these genes. Subsequently, the mechanism of action of the inducible factor interleukin 13 (IL-13) in human bronchial epithelial (HBE) cells and its effect on markers of asthma were verified .
Results: The DGE analysis and WGCNA identified 62 asthma-related genes, and eight asthma-associated immune genes were identified after the intersection of the asthma-related genes and the immune-related genes. Utilizing LASSO regression, five key immune genes linked to asthma were uncovered. These included S100 calcium binding protein A16 (), Lactotransferrin (LTF), BPI fold containing family A member 1 (BPIFA1), cystatin 4 (CST4), and growth-related protein (GRP). The area under the curve (AUC) values of and were greater than 0.8. The single-cell analysis showed that was highly expressed in asthmatic neutrophils. Finally, the results of the experiments showed that IL-13 not only induced lipid peroxidation to promote iron death in the HBE cells, but also promoted the expression of .
Conclusions: This study identified a new biomarker, , for the diagnosis of asthma. may serve as a new potential target for asthma treatment, and may be an important regulator of ferroptosis.
Download full-text PDF |
Source |
---|---|
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC12268608 | PMC |
http://dx.doi.org/10.21037/jtd-2025-874 | DOI Listing |
Funct Integr Genomics
September 2025
Department of Plastic Surgery, the First Affiliated Hospital of Fujian Medical University, Fuzhou, 350005, China.
Keloid scarring and Metabolic Syndrome (MS) are distinct conditions marked by chronic inflammation and tissue dysregulation, suggesting shared pathogenic mechanisms. Identifying common regulatory genes could unveil novel therapeutic targets. Methods.
View Article and Find Full Text PDFFunct Integr Genomics
September 2025
The First Clinical Medical College, Yunnan University of Chinese Medicine, Kunming, China.
Ischemic stroke (IS) has high morbidity/mortality with limited treatments. This study screened core copper homeostasis-related genes in IS and validated their function as precise intervention targets. Human IS gene chip data were retrieved from GEO, and copper homeostasis genes from multiple databases.
View Article and Find Full Text PDFElife
September 2025
Department of Urology, Tongji Hospital, Tongji Medical College, Huazhong University of Science and Technology, Wuhan, China.
Immunogenic cell death (ICD) is a type of cell death sparking adaptive immune responses that can reshape the tumor microenvironment. Exploring key ICD-related genes in bladder cancer (BLCA) could enhance personalized treatment. The Cancer Genome Atlas (TCGA) BLCA patients were divided into two ICD subtypes: ICD-high and ICD-low.
View Article and Find Full Text PDFHLA
September 2025
Aix Marseille Univ, CNRS, EFS, ADES, Marseille, France.
Abnormal expression of HLA class Ib, MICA and MICB molecules is associated with the evolution of pathological conditions and clinical settings. Here, we use RNA-sequencing data from two publicly-available projects, from different human organs and tissues and at single-cell level, to present their transcriptional expression throughout the human body, in comparison to that of HLA class Ia, HLA class II, their costimulatory molecules, and the main HLA transcription factors. Our analyses for 21 target genes reveal that median gene expression differs by orders of magnitude and that the classical/non-classical HLA distinction is not absolute for overall expression.
View Article and Find Full Text PDFNanotoxicology
September 2025
Department of Biophysics of Environmental Pollution, Faculty of Biology and Environmental Protection, University of Lodz, Lodz, Poland.
The effect of non-functionalized polystyrene nanoparticles (PS-NPs) with diameters of 29, 44, and 72 nm on plasmid DNA integrity and the expression of genes involved in the architecture of chromatin was investigated in human peripheral blood mononuclear cells (PBMCs). The cells were incubated with PS-NPs at concentrations ranging from 0.001 to 100 µg/mL for 24 hours.
View Article and Find Full Text PDF