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Intervertebral disc degeneration (IDD), a common cause of chronic low back pain, strongly impacts daily life. Although previous studies have identified certain biomarkers indicating IDD, comprehensive analyses that integrate transcriptomic and proteomic data to elucidate age-related changes in IDD are lacking. We addressed this issue by integrating transcriptomic and proteomic analyses to identify key molecular signatures that may be potential therapeutic targets for improving the treatment of age-related IDD. We used transcriptomic and proteomic analyses to identify key regulatory genes associated with IDD. We performed RNA sequencing and mass spectrometry of 3 elderly patients with IDD and 3 younger patients with intervertebral disc lesions. Statistical analysis and GO and KEGG enrichment analyses were employed to interpret the transcriptomic and proteomic data. Validation was performed with external datasets and RT‒qPCR. Gene regulatory network and ceRNA network analyses revealed the factors associated with characteristic genes. Transcriptomic and proteomic analyses revealed 45 differentially expressed genes (DEGs) and 34 differentially expressed proteins (DEPs) associated with IDD. We identified CXCL14 as the sole molecule significantly upregulated in IDD at both the transcriptome (4.2-fold, p < 0.001) and proteome levels (3.8-fold, p = 0.003). RT‒qPCR confirmed CXCL14 overexpression in elderly IDD patients (|log2-fold change| =4.1, p < 0.001), consistent with external dataset analysis (GSE147383: |log2-fold change| =1.3, p = 0.008). Gene regulatory networks revealed that CXCL14 interacts with inflammatory mediators (IL-1β and TNF-α) and activates the NF-κB pathway, a key driver of extracellular matrix degradation and inflammation. ceRNA network analysis further identified hsa-miR-582-3p and hsa-miR-150-5p as potential upstream regulators of CXCL14. We analysed the expression profiles of elderly IDD patients and younger patients through transcriptomic and proteomic analyses, identifying unique molecular features associated with IDD. These findings lay a foundation for developing targeted treatments for elderly IDD patients and provide broader insights into potential therapeutic strategies for managing ageing-related IDD across different patient populations. CXCL14 is a potential therapeutic target for pain associated with age-related IDD and could inform the development of novel drug therapies and diagnostic tools, potentially improving clinical outcomes and providing a basis for personalized treatment approaches in managing chronic low back pain and IDD.
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http://dx.doi.org/10.1038/s41598-025-10998-9 | DOI Listing |
Front Pediatr
August 2025
Department of Neonatal Research, Inova Health Services, Falls Church, VA, United States.
Introduction: Neonatal sepsis is a dysregulated immune response to bloodstream infection causing serious disease and death. Our review seeks to integrate the knowledge gained from studies of multiple molecular methods- such as genomics, metabolomics, transcriptomics, and the gut microbiome- in the setting of neonatal sepsis that may improve the diagnosis, classification, and treatment of the disease. Sepsis claims over 200,000 lives annually worldwide and remains a top 10 cause of infant mortality in the US.
View Article and Find Full Text PDFSemin Nephrol
September 2025
Division of Nephrology, Internal Medicine, University of Michigan, Ann Arbor, MI. Electronic address:
Despite intensive research efforts, acute kidney injury (AKI) is a common clinical syndrome that has limited treatment options apart from supportive care. The increasing availability of molecular interrogation data from patients with Acute Kidney Injury provides an unparalleled opportunity to leverage systems biology approaches. In this review, we discuss the challenges with AKI research, explain how systems biology approaches can link molecular data to clinical phenotypes, review available molecular interrogation tools and techniques, and provide examples where systems biology approaches have been successfully applied in nephrology.
View Article and Find Full Text PDFPLoS Genet
September 2025
Department of Biology/Chemistry, Division of Genetics, University of Osnabrück, Barbarastrasse, Osnabrück, Germany.
The small GTPase Rho5 has been shown to be involved in regulating the Baker's yeast response to stress on the cell wall, high medium osmolarity, and reactive oxygen species. These stress conditions trigger a rapid translocation of Rho5 and its dimeric GDP/GTP exchange factor (GEF) to the mitochondrial surface, which was also observed upon glucose starvation. We here show that rho5 deletions affect carbohydrate metabolism both at the transcriptomic and the proteomic level, in addition to cell wall and mitochondrial composition.
View Article and Find Full Text PDFJ Clin Invest
September 2025
The University of Texas at Austin, Austin, United States of America.
Background: Following SARS-CoV-2 infection, ~10-35% of COVID-19 patients experience long COVID (LC), in which debilitating symptoms persist for at least three months. Elucidating biologic underpinnings of LC could identify therapeutic opportunities.
Methods: We utilized machine learning methods on biologic analytes provided over 12-months after hospital discharge from >500 COVID-19 patients in the IMPACC cohort to identify a multi-omics "recovery factor", trained on patient-reported physical function survey scores.
Cancer Biol Med
September 2025
State Key Laboratory of Holistic Integrative Management of Gastrointestinal Cancers, Peking University Cancer Hospital & Institute, Beijing 100142, China.
Objective: The key molecular events signifying the -induced gastric carcinogenesis process are largely unknown.
Methods: Bulk tissue-proteomics profiling were leveraged across multi-stage gastric lesions from Linqu ( = 166) and Beijing sets ( = 99) and single-cell transcriptomic profiling ( = 18) to decipher key molecular signatures of -related gastric lesion progression and gastric cancer (GC) development. The association of key proteins association with gastric lesion progression and GC development were prospectively studied building on follow-up of the Linqu set and UK Biobank ( = 48,529).