Drought-driven shifts in rhizosphere mycobiota and metabolites mediate host tolerance.

Microbiol Spectr

Department of Ecology/Key laboratory of Plant Resource Conservation and Germplasm Innovation in Mountainous Region (Ministry of Education), College of Life Sciences, Institute of Fungus Resources, Guizhou University, Guiyang, Guizhou, China.

Published: August 2025


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Article Abstract

Drought poses considerable challenges to the sustainable development of crops, highlighting the urgent need to improve plant resistance to drought stress. Rhizosphere mycobiota roles in drought adaptation remain uncharacterized. This study examines rhizosphere mycobiota diversity, its changes, and interactions with plant physiology and metabolites under drought stress using amplicon sequencing, plant physiological assessments, and non-targeted root metabolomics. Our data indicate that drought stress considerably altered the species richness and community composition of the seedling rhizosphere mycobiota, affecting the co-occurrence patterns and the composition of core fungal taxa within the mycobiota. Additionally, were notably enriched in the rhizosphere of under drought stress and showed a notable positive correlation with the physiological indicator soluble sugar (SS). During drought stress mid-stages, rhizosphere core fungal taxa of exhibit higher diversity, increased network connectivity, and a tighter network structure. Correlation analyses show that core fungal taxa are significantly linked to malondialdehyde (MDA) content. The root metabolome's phosphatidylcholines (o-16:0/22:6(4Z,7Z,10Z,13Z,16Z,19Z)) and 8-demethyltetracenomycin C are also notably affected by the core microbial taxa. In summary, drought stress drives changes in the rhizosphere mycobiota, plant physiology, and root metabolites, with MDA, SS, and 8-demethyltetracenomycin C possibly mediating the selection of specific rhizosphere fungal communities. Taken together, these data provide notable insights into plant-microbe interactions under drought stress and have important implications for improving the drought adaptability of .IMPORTANCEDrought presents substantial challenges to the sustainability of crops, highlighting the need to enhance their resistance to arid conditions. Although the rhizosphere microbiome plays a crucial role in bolstering crop resilience, the dynamics and mechanisms of ' rhizosphere mycobiota under drought conditions remain poorly understood. This study provides valuable insights into the interactions between plants and microbes under drought stress and has significant implications for improving the drought adaptability of .

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http://www.ncbi.nlm.nih.gov/pmc/articles/PMC12323333PMC
http://dx.doi.org/10.1128/spectrum.00847-25DOI Listing

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