Function and regulation of genes for 4-hydroxybenzoate catabolism in .

Appl Environ Microbiol

College of Bioscience and Biotechnology, Yangzhou University, Yangzhou, China.

Published: July 2025


Category Ranking

98%

Total Visits

921

Avg Visit Duration

2 minutes

Citations

20

Article Abstract

is a pathogen that causes tumors in plants. Phenolic acids present in the soil and rhizosphere may affect the interaction between and plants. An important pathway for microorganisms to degrade phenolic acids is the β-ketoadipate pathway, which has been annotated in the genome of . The ability of the PobA (atu4544) enzyme to catalyze the conversion of 4-hydroxybenzoate to protocatechuate was essential for cell growth using 4-hydroxybenzoate as the sole carbon source. The gene is located upstream of , encoding an AraC transcription factor (PobR). Strains with deleted or supplemented exhibited similar growth characteristics on common and phenolic acid-containing carbon sources as strains with deleted or supplemented . Strains with a reporter fusion showed that PobR induced expression. In addition, the use of a reporter fusion showed that PobR represses its expression. Electromobility shift assay revealed that the PobR regulator can bind specifically to DNA. The binding site was identified as CGTGCGATGGTGGATT. Deletions of () and () decreased pathogenicity by infecting carrot roots and kalanchoe leaves, with no effect on genes, and decreased bacterial biomass when phenolic acids were present. The collective findings demonstrate how transcriptional regulation by controls the metabolism of 4-hydroxybenzoate and imply that PobA and PobR aid in bacterial survival during host plant infection.IMPORTANCE is a widely distributed environmental bacterium and a recognized phytopathogen. Phenolic acids influence the relationship between and plants. One of the most important phenolic acids found in soil is 4-hydroxybenzoate, which is generated by plants. Mutants defective in the and genes inhibit tumor development. The -encoded enzyme, PobA, can metabolize 4-hydroxybenzoate, and the expression of its gene is positively regulated by the transcription factor encoded by . The gene is subject to negative autoregulation. The binding site of atu4545 is CGTGCGATGGTCGGATT. Dual regulation of regulators for phenolic acid catabolism may aid in the maintenance of appropriate quantities of phenolic compounds. These results clarify the pathogenic mechanisms of and broaden the understanding of the metabolic control mechanisms of phenolic chemicals.

Download full-text PDF

Source
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC12285266PMC
http://dx.doi.org/10.1128/aem.00255-25DOI Listing

Publication Analysis

Top Keywords

phenolic acids
20
phenolic
9
plants phenolic
8
acids soil
8
transcription factor
8
strains deleted
8
deleted supplemented
8
reporter fusion
8
fusion pobr
8
binding site
8

Similar Publications

A Highly Effective Biomimetic Method for Simultaneously Enhancing the Stability and Functionality of Merocyanine Photoacids.

J Phys Chem B

September 2025

Department of Chemistry and Chemical Engineering, Florida Institute of Technology, Melbourne, Florida 32901, United States.

Merocyanine photoacids (MCHs) have found applications in chemical, material, energy, and biomedical areas, and are currently being investigated for industrial applications. Hydrolysis, relatively high dark acidity, and moderate solubility in water are the major concerns for their practical applications. Inspired by the structure of the cell membrane, we incorporated the most commonly used MCH into sodium dodecyl sulfate (SDS) micelles.

View Article and Find Full Text PDF

Tobacco ( L.) is well-known as an economic crop whose quality is evaluated according to its aroma quality. Researchers have found that selenium application can increase the aroma quality of tobacco, but until now, its mechanism is still unclear.

View Article and Find Full Text PDF

Quality changes in thermally-treated stingless bee honey during room temperature storage.

Food Sci Biotechnol

October 2025

Department of Food and Agricultural Product Technology, Faculty of Agricultural Technology, Universitas Andalas, Padang, 25163 Indonesia.

This study examined quality changes in () stingless bee honey subjected to thermal treatment and stored at room temperature. Honey was heated at 55, 75, and 90 °C for 10 or 20 min and then stored at 30 °C for 40 days. Physicochemical parameters including moisture content, total soluble solids (TSS), pH, acidity, viscosity, hydroxymethylfurfural (HMF), color (L*, a*, b*), antioxidant activity, and total phenolic content were analyzed.

View Article and Find Full Text PDF

Application of Chitosan and Pectin-Based Nanoemulsion Coating for the Preservation of Plum () Fruit.

Food Sci Nutr

September 2025

Department of Food Science, Faculty of Food Science and Technology Natural Medicines and Products Research Laboratory, Institute of Bioscience (IBS) Laboratory of Food Safety and Food Integrity, Institute of Tropical Agriculture and Food Security (ITAFoS) Universiti Putra Malaysia Selangor Serdang M

Pectin, a bioactive polysaccharide, was mixed with chitosan (CS) and blended with three essential oil formulations to prepare nanoemulsion-based edible coatings. Three nanoemulsion-based coatings, C, C, and C, comprising chitosan and pectin at ratios of 1:1, 1.25:1.

View Article and Find Full Text PDF

Physicochemical properties and sensory acceptability of acai sorbet enriched with waste flour from Amazonian fruits.

J Food Sci Technol

October 2025

Centro de Ciências Químicas, Farmacêuticas e de Alimentos (CCQFA), Universidade Federal de Pelotas (UFPEL), Prédio 31, Sala 103, Capão do Leão, Pelotas, RS 960010-900 Brazil.

Abstract: This study aimed to evaluate the physicochemical properties of fruit waste flour (FWF) composed of pineapple, acerola, and passion fruit (adapted from the Brazilian Amazon) and its impact on the physicochemical and sensory attributes of edible ice cream. FWF was measured for parameters of the proximate composition, total fibers, total phenolic content, and antioxidant capacity. Three formulations of sorbet-type edible ice cream were developed: one addition with FWF (AFWF), one without FWF (WFWF), and a commercial standard (CS) sample; these were characterized based on the proximate composition, total fibers, pH, total acidity, water activity, instrumental color, and sensory acceptance (flavor, texture, and overall appearance).

View Article and Find Full Text PDF