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High-quality training data are not always available in dynamic MRI. To address this, we propose a self-supervised deep learning method called deep image prior with structured sparsity (DISCUS) for reconstructing dynamic images. DISCUS is inspired by deep image prior (DIP) and recovers a series of images through joint optimization of network parameters and input code vectors. However, DISCUS additionally encourages group sparsity on frame-specific code vectors to discover the low-dimensional manifold that describes temporal variations across frames. Compared to prior work on manifold learning, DISCUS does not require specifying the manifold dimensionality. We validate DISCUS using three numerical studies. In the first study, we simulate a dynamic Shepp-Logan phantom with frames undergoing random rotations, translations, or both, and demonstrate that DISCUS can discover the dimensionality of the underlying manifold. In the second study, we use data from a realistic late gadolinium enhancement (LGE) phantom to compare DISCUS with compressed sensing (CS) and DIP, and to demonstrate the positive impact of group sparsity. In the third study, we use retrospectively undersampled single-shot LGE data from five patients to compare DISCUS with CS reconstructions. The results from these studies demonstrate that DISCUS outperforms CS and DIP, and that enforcing group sparsity on the code vectors helps discover true manifold dimensionality and provides additional performance gain.
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http://dx.doi.org/10.1109/isbi56570.2024.10635579 | DOI Listing |
Retina
September 2025
From the Vitreous, Retina, Macula Consultants of New York, New York, NY.
Purpose: To reassess the anatomic basis of optic disc pit maculopathy (OPM) using swept-source optical coherence tomography (SS-OCT) and to characterize the broader structural abnormalities comprising the optic pit complex.
Methods: Sixteen patients with OPM were imaged using a high-resolution SS-OCT system (DREAM OCT). Cross-sectional and volume-rendered scans were analyzed for lamina cribrosa defects, intraneural cavitations, and pathways for fluid entry into or beneath the retina.
STAR Protoc
September 2025
Laboratory of Genome Integrity, CCR, NCI, NIH, Bethesda, MD, USA. Electronic address:
Tracking the translocation of fluorescent-based reporters at the single-cell level in living mouse embryos requires specialized expertise in mouse embryology and deep computational skills. Here, we detail an approach to quantify cyclin-dependent kinase (CDK) activity levels in single cells throughout different stages of the pre-implantation embryo. We discuss in vitro culture strategies that enable efficient live fluorescent confocal image acquisition and subsequent cell tracking.
View Article and Find Full Text PDFIEEE Trans Biomed Eng
September 2025
Objective: Diffusion magnetic resonance imaging (dMRI) often suffers from low spatial and angular resolution due to inherent limitations in imaging hardware and system noise, adversely affecting the accurate estimation of microstructural parameters with fine anatomical details. Deep learning-based super-resolution techniques have shown promise in enhancing dMRI resolution without increasing acquisition time. However, most existing methods are confined to either spatial or angular super-resolution, disrupting the information exchange between the two domains and limiting their effectiveness in capturing detailed microstructural features.
View Article and Find Full Text PDFIEEE Trans Med Imaging
September 2025
Mammography is a primary method for early screening, and developing deep learning-based computer-aided systems is of great significance. However, current deep learning models typically treat each image as an independent entity for diagnosis, rather than integrating images from multiple views to diagnose the patient. These methods do not fully consider and address the complex interactions between different views, resulting in poor diagnostic performance and interpretability.
View Article and Find Full Text PDFJMIR Med Inform
September 2025
Department of Radiology, Air Force Medical Center, Air Force Medical University, Fucheng Road 30, Haidian District, Beijing, CN.
Background: Lateral malleolar avulsion fracture (LMAF) and subfibular ossicle (SFO) are distinct entities that both present as small bone fragments near the lateral malleolus on imaging, yet require different treatment strategies. Clinical and radiological differentiation is challenging, which can impede timely and precise management. On imaging, magnetic resonance imaging (MRI) is the diagnostic gold standard for differentiating LMAF from SFO, whereas radiological differentiation on computed tomography (CT) alone is challenging in routine practice.
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