98%
921
2 minutes
20
Trichaptum biforme is a white-rot fungus that plays a key role in the process of cellulose degradation. In this study, we employed a suite of techniques to sequence the genome of T. biforme, and achieved high-quality assembly and detailed annotation. The genome spans 50.71 Mb, comprises 13 chromosomal pseudomolecules, and encodes 15,302 predicted genes, exhibiting a BUSCO completeness of 96.30 %. Comparative genomic analysis has elucidated the similarities in gene composition and the differences in evolutionary pressure between T. biforme and T. abietinum. Phylogenetic analysis revealed the evolutionary position of T. abietinum and indicates that their divergence time is 21.20 million years ago (MYAs). Bioinformatic analysis revealed 375 genes encoding carbohydrate-active enzymes (CAZymes), of which 144 CAZymes were predicted to interact with 18 polysaccharide synthases. In conclusion, this work reports for the first time the genome of T. biforme, providing a comprehensive understanding of its complex functions, and elucidating the genetic basis of its ability to degrade lignocellulose.
Download full-text PDF |
Source |
---|---|
http://dx.doi.org/10.1016/j.ygeno.2025.111057 | DOI Listing |
Genomics
May 2025
Shaanxi Province Key Laboratory of Bio-Resources, Qinba State Key Laboratory of Biological Resources and Ecological Environment (Incubation), School of Biological Science and Engineering, Shaanxi University of Technology, Hanzhong 723000, China; Agricultural Technology Extension Center of Liuba Coun
Trichaptum biforme is a white-rot fungus that plays a key role in the process of cellulose degradation. In this study, we employed a suite of techniques to sequence the genome of T. biforme, and achieved high-quality assembly and detailed annotation.
View Article and Find Full Text PDFInt J Biol Macromol
September 2024
Laboratory of Growth Regulators, Palacký University and Institute of Experimental Botany, The Czech Academy of Sciences, Šlechtitelů 27, 78371 Olomouc, Czech Republic. Electronic address:
Cancer remains a major global health concern, often challenging traditional treatments. Natural compounds like fungal polysaccharides have gained attention for their immune-modulatory properties. This study evaluates the phytochemical properties of the n-hexane fraction of Trichaptum biforme and explores its immune-enhancing effects.
View Article and Find Full Text PDFJ Appl Microbiol
January 2023
Department of Horticulture, Faculty of plant production, Gorgan University of Agricultural Sciences and Natural Resources, Gorgan 4918943464, Iran.
Environ Sci Pollut Res Int
October 2021
Faculty of Science and Literature, Department of Molecular Biology and Genetics, Kilis 7 Aralik University, TR-79000, Kilis, Turkey.
The aim of this study was to determine the element content of wild edible and inedible mushroom species (Agaricus campestris, Armillaria ostoyae, Boletus reticulatus, Bondarzewia mesenterica, Bovistella utriformis, Cantharellus cibarius, Marasmius oreades, Megacollybia platyphylla, Meripilus giganteus, Neoboletus erythropus, Panellus stipticus, Phaeotremella foliacea, Pleurotus ostreatus, Podoscypha multizonata, Russula aurea, R. chloroides, R. virescens, T.
View Article and Find Full Text PDFJ AOAC Int
June 2020
Microbiological Sciences Branch, Southeast Food and Feed Laboratory, Office of Regulatory Affairs, U. S. Food and Drug Administration, 60, Eighth Street NE, Atlanta, GA 30309, USA.
Background: In September 2012, a multistate fungal meningitis outbreak started across 20 states in the United States. It affected 753 individuals and caused 64 deaths who received contaminated spinal injections. In a previous study, we analyzed 26 environmental samples collected from the manufacturing premises of a compounding company to determine the possible cause of an outbreak and identified 14 distinct fungal species.
View Article and Find Full Text PDF