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In video-based fish surveys, species recognition plays a vital role in stock assessments, ecosystem analysis, production management, and protection of endangered species. However, implementing fish species detection algorithms in underwater environments presents significant challenges due to factors such as varying lighting conditions, water turbidity, and the diverse appearances of fish species. In this work, a transformer-enhanced YOLOv8 (YOLOv8-TF) is proposed for underwater fish species recognition. The YOLOv8-TF enhances the performance of YOLOv8 by adjusting depth scales, incorporating a transformer block into the backbone and neck, and introducing a class-aware loss function to address class imbalance in the dataset. The class-aware loss considers the count of instances within each species and assigns a higher weight to species with fewer instances. This approach enables fish species recognition through object detection, encompassing the classification of each fish species and localization to estimate their position and size within an image. Experiments were conducted using the 2021 Southeast Area Monitoring and Assessment Program (SEAMAPD21) dataset, a detailed and extensive reef fish dataset from the Gulf of Mexico. The experimental results on SEAMAPD21 demonstrate that the YOLOv8-TF model, with a mean Average Precision (mAP) of 87.9% and mAP of 61.2%, achieves better detection results for underwater fish species recognition compared to state-of-the-art YOLO models. Additionally, experimental results on the publicly available datasets, such as Pascal VOC and MS COCO datasets demonstrate that the model outperforms existing approaches.
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http://dx.doi.org/10.3390/s25061846 | DOI Listing |
J Fish Biol
September 2025
Instituto Mexicano de Investigación en Pesca y Acuacultura Sustentables, Dirección de Investigación Pesquera del Pacífico, Guaymas, Sonora, Mexico.
Natural mortality rate (M) is a crucial parameter for fish and other species. In fisheries management it is common practice to obtain estimates of M using one of several empirical formulas available in the literature. However, when using these formulas, an important question arises: for which life stage or age does the estimated rate pertain to? In the present work, gnomonic stage-specific mortality rates are estimated for Totoaba macdonaldi, a vulnerable fish species of the gulf of California.
View Article and Find Full Text PDFJ Fish Biol
September 2025
College of Earth, Ocean, and Environment, University of Delaware, Lewes, Delaware, USA.
Vision is one of the most important means by which animals perceive their environment. In the pelagic ocean, there is an enormous gradient of available light from the well-lit surface to the deep bathypelagic zone. Fish inhabiting different depths of the pelagic ocean must adapt to these conditions.
View Article and Find Full Text PDFGenome Biol
September 2025
Fisheries Research Institute, Sichuan Academy of Agricultural Sciences, Chengdu, 611730, China.
Background: Fish are the largest group of vertebrates. Studying the characteristics, functions, and interactions of different fish cells is important for understanding their roles in disease and evolution. However, most single cell RNA-seq studies in fish are restricted to a few specific organs, leaving a comprehensive cell landscape that aims to characterize the heterogeneity and connections among body-wide organs largely unexplored.
View Article and Find Full Text PDFTheor Appl Genet
September 2025
Leibniz Institute of Plant Genetics and Crop Research (IPK), 06466, Gatersleben, Germany.
To breed for climate resilient crops, an understanding of the genetic and environmental factors influencing adaptation is critical. Barley provides a model species to study adaptation to climate change. Here we present a detailed analysis of genetic variation at a major photoperiod response locus and relate this to the domestication history and dispersal of barley.
View Article and Find Full Text PDFJ Econ Entomol
September 2025
Beta Hatch Inc, Cashmere, WA, USA.
Tenebrio molitor L. (Coleoptera Tenebrionidae) is 1 of the 3 most important species of industrialized insects worldwide. Its potential as a substitute for fish meal in animal feed formulations and as a source of protein and lipid for human consumption has increased over the years.
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