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The prefrontal cortex (PFC) is a brain region involved in higher-order cognitive processes such as attention, emotional regulation, and social behavior. However, the delineation of distinct subdivisions within the mouse PFC and their contributions to the broader brain network function remain debated. This study utilizes resting-state functional magnetic resonance imaging (MRI) from a cohort of 100 C57BL/6J wild-type mice to derive the functional connectivity (FC)-based parcellation of the mouse PFC with voxel resolution. Our findings reveal clusters that deviate from the established anatomical subdivisions within the cingulate and prelimbic areas while aligning in infralimbic and orbital cortices. Upon the chemogenetic perturbation of one of the clusters, FC perturbations occur only within the functional network linked to the targeted cluster and do not spread to neighboring anatomical areas or functional clusters. We propose FC-based parcellation as a valuable approach for tracking the site of activation and network impact of neurostimulation strategies.
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http://dx.doi.org/10.1016/j.celrep.2025.115622 | DOI Listing |
J Neural Eng
September 2025
School of Biomedical Engineering, Southern Medical University, Guangzhou 510515, People's Republic of China.
. Conventional functional connectivity (FC) analysis of wide-field calcium imaging (WFCI) data relies on the assumption of homogeneity within predefined anatomical functional areas (FAs), where the signal averaged within each FA serves as the foundation for inter-FA connectivity modeling. However, accumulating evidence suggested significant intra-FA functional heterogeneity with functionally distinct subregions.
View Article and Find Full Text PDFNeuroimage
September 2025
Institute of Experimental and Clinical Pharmacology and Toxicology, Friedrich-Alexander-Universität Erlangen-Nürnberg, Fahrstraße 17, 91054 Erlangen, Germany; Department of Neuroradiology, University Hospital Erlangen, Friedrich-Alexander-Universität Erlangen-Nürnberg, Schwabachanlage 6, 91054
The results of functional magnetic resonance imaging (fMRI) cannot be interpreted directly at the molecular or genetic level. Our integrative workflow aims to add a genetic dimension to the functional interpretation using a publicly available mouse brain gene expression database (AMBA) from the Allen Institute for Brain Science. From an average of 164 in-house measured mouse thermal pain fMRI datasets, we identified the top and bottom 5 % of voxels according to their activation probability (AP) in response to warm and hot hind paw stimulation.
View Article and Find Full Text PDFBrain Behav
July 2025
Institute of Anatomy and Cell Biology, National Yang Ming Chiao Tung University, Taipei, Taiwan.
Background: While prior studies have identified regional reduction in gray matter (GM) volume in schizophrenia, it remains unclear whether these alterations are concentrated in specific brain functional areas and how they relate to genetic factors. This study aimed to identify Brodmann's areas (BAs) with affected GM volume in individuals with schizophrenia, explore associated genetic variants through a genome-wide association study (GWAS), and investigate the potential roles of these genes during cortical development.
Methods: The study recruited 194 individuals with schizophrenia and 330 healthy controls from the Taiwan Aging Mental Illness cohort.
Neural Netw
October 2025
Computer Science and Artificial Intelligence Laboratory, Massachusetts Institute of Technology, Cambridge, 02139, MA, USA. Electronic address:
Leveraging retinotopic maps to parcellate the visual cortex into its respective sub-regions has long been a canonical approach to characterizing the functional organization of visual areas in the mouse brain. However, with the advent of extensive connectomics datasets like MICrONS, we can now perform more granular analyses to better characterize the structure and function of the visual cortex. In this work, we propose a statistical framework for analyzing the MICrONS dataset, particularly the V1, RL, and AL visual areas.
View Article and Find Full Text PDFCell Rep
May 2025
Department of Psychiatry, Faculty of Medicine, University of Geneva, Geneva, Switzerland; Department of Basic Neurosciences, Faculty of Medicine, University of Geneva, Geneva, Switzerland. Electronic address:
The prefrontal cortex (PFC) is a brain region involved in higher-order cognitive processes such as attention, emotional regulation, and social behavior. However, the delineation of distinct subdivisions within the mouse PFC and their contributions to the broader brain network function remain debated. This study utilizes resting-state functional magnetic resonance imaging (MRI) from a cohort of 100 C57BL/6J wild-type mice to derive the functional connectivity (FC)-based parcellation of the mouse PFC with voxel resolution.
View Article and Find Full Text PDF