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Cyanobacteriochromes are photoreceptors that constitute a significant subset of phycocyanobilin-bound proteins, yet the details of their excited-state photochemical and structural dynamics have not been fully elucidated. Here, we investigate the photoisomerization dynamics of a newly identified far-red/orange light-absorbing cyanobacteriochrome using femtosecond-resolved fluorescence and absorption methods. We observed active-site relaxations ranging from a few to hundreds of picoseconds for both far-red and orange-absorbing states. As such relaxations modulate the potential energy landscape of the chromophore, we also observed a unique dynamic spectral tuning in the far-red-absorbing state and an apparent dynamic Stokes shift in the orange-absorbing state in the femtosecond-resolved fluorescence spectra. We found that the isomerization reactions in both states occur within 320-400 ps. The observed correlation of the local relaxation and the phycocyanobilin twisting can be critical to the subsequent conformational changes after isomerization through the conical intersection to reach the final biological functions. Understanding of the time scales of the local relaxations and isomerization reactions is important to guide the design and engineering of phycocyanobilin-based light-sensitive systems of desired optical properties via synthetic biology.
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http://dx.doi.org/10.1021/acs.jpclett.5c00487 | DOI Listing |
J Phys Chem Lett
May 2025
Department of Physics, Department of Chemistry and Biochemistry, and Programs of Biophysics, Chemical Physics, and Biochemistry, The Ohio State University, Columbus, Ohio 43210, United States.
Cyanobacteriochromes are photoreceptors that constitute a significant subset of phycocyanobilin-bound proteins, yet the details of their excited-state photochemical and structural dynamics have not been fully elucidated. Here, we investigate the photoisomerization dynamics of a newly identified far-red/orange light-absorbing cyanobacteriochrome using femtosecond-resolved fluorescence and absorption methods. We observed active-site relaxations ranging from a few to hundreds of picoseconds for both far-red and orange-absorbing states.
View Article and Find Full Text PDFJ Phys Chem B
October 2023
Instituto de Química, Universidad Nacional Autónoma de México, Circuito Exterior, Ciudad Universitaria, Ciudad de México 04510, México.
Nicotinamide adenine dinucleotide (NADH) is an important enzyme cofactor with emissive properties that allow it to be used in fluorescence microscopies to study cell metabolism. Its oxidized form NAD, on the other hand, is considered to produce negligible fluorescence. In this contribution, we describe the photophysics of the isolated nicotinamidic system in both its reduced and oxidized states.
View Article and Find Full Text PDFJ Phys Chem Lett
December 2022
Fatty acid photodecarboxylase is a newly identified blue-light driven photoenzyme that catalyzes decarboxylation of fatty acids. The catalytic reaction involves a transient anionic semiquinone of flavin cofactor (FAD) as an intermediate, but photochemical properties of this anionic radical are largely unknown. Here, we have anaerobically produced the wild-type FAP in the FAD state and conducted femtosecond-resolved fluorescence and absorption measurements.
View Article and Find Full Text PDFMolecules
June 2022
Department of Chemistry, Biology and Biotechnology and "Centro di Eccellenza Materiali Innovativi Nanostrutturati" (CEMIN), University of Perugia, Via Elce di Sotto 8, 06123 Perugia, Italy.
Small organic molecules arouse lively interest for their plethora of possible biological applications, such as anticancer therapy, for their ability to interact with nucleic acids, or bioimaging, thanks to their fluorescence emission. Here, a panchromatic series of styryl-azinium bicationic dyes, which have already proved to exhibit high water-solubility and significant red fluorescence in water, were investigated through spectrofluorimetric titrations to assess the extent of their association constants with DNA and RNA. Femtosecond-resolved transient absorption spectroscopy was also employed to characterize the changes in the photophysical properties of these fluorophores upon interaction with their biological targets.
View Article and Find Full Text PDFPhys Chem Chem Phys
August 2021
Department of Chemistry, Biology and Biotechnology and Centro di Eccellenza sui Materiali Innovativi Nanostrutturati (CEMIN) University of Perugia, via Elce di Sotto 8, 06123 Perugia, Italy.
Two symmetric quadrupolar cationic push-pull compounds with a central electron-acceptor (N+-methylpyrydinium, A+) and different lateral electron-donors, (N,N-dimethylamino and N,N-diphenylamino, D) in a D-π-A+-π-D arrangement, were investigated together with their dipolar counterparts (D-π-A+) for their excited-state dynamics and NLO properties. As for the quadrupolar compounds, attention was focused on excited-state symmetry breaking (ESSB), which leads to a relaxed dipolar excited state. Both electron charge displacements and structural rearrangements were recognized in the excited-state dynamics of these molecules by resorting to femtosecond-resolved broadband fluorescence up-conversion experiments and advanced data analysis, used as a valuable alternative approach for fluorescent molecules compared to time-resolved IR spectroscopy, only suitable for compounds bearing IR markers.
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