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Transformers have shown great potential in vision tasks such as semantic segmentation. However, most of the existing transformer-based segmentation models neglect the cross-attention between pixel features and class features which impedes the application of transformers. Inspired by the concept of object queries in k-means Mask Transformer, we develop cluster learning and contrastive cluster assignment (CCA) for medical image segmentation in this paper. The cluster learning leverages the object queries to fit the feature-level cluster centers. The contrastive cluster assignment is introduced to guide the pixel class prediction using the cluster centers. Our method is a plug-in and can be integrated into any model. We design two networks for supervised segmentation tasks and semi-supervised segmentation tasks respectively. We equip the decoder with our proposed modules for the supervised segmentation to improve the pixel-level predictions. For the semi-supervised segmentation, we enhance the feature extraction capability of the encoder by using our proposed modules. We conduct comprehensive comparison and ablation experiments on public medical image datasets (ACDC, LA, Synapse, and ISIC2018), the results demonstrate that our proposed models outperform state-of-the-art models consistently, validating the effectiveness of our proposed method. The source code is accessible at https://github.com/zhujinghua1234/CCA-Seg.
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http://dx.doi.org/10.1016/j.neunet.2025.107415 | DOI Listing |
IEEE Trans Neural Netw Learn Syst
September 2025
Unsupervised visible-infrared person reidentification (UVI-ReID) has recently gained great attention due to its potential for enhancing human detection in diverse environments without labeling. Previous methods utilize intramodality clustering and cross-modality feature matching to achieve UVI-ReID. However, there exist two challenges: 1) noisy pseudo-labels might be generated in the clustering process and 2) the cross-modality feature alignment via matching the marginal distribution of visible and infrared modalities may misalign the different identities from the two modalities.
View Article and Find Full Text PDFInt J Biol Macromol
September 2025
Institute of Cytology Russian Academy of Sciences, St. Petersburg, Russia; Laboratory of structural dynamics, stability and folding of proteins, Institute of Cytology Russian Academy of Sciences, 4 Tikhoretsky ave., 194064, St. Petersburg, Russia. Electronic address:
Growing evidence links gut microbiota to neurodegenerative diseases, yet direct molecular interactions between bacterial and host amyloid proteins remain incompletely understood. Bacterial amyloids represent an understudied yet potentially critical component of gut-brain communication in neurodegeneration. Here, we provide the first investigation of whether amyloids formed by outer membrane proteins (OMPs) of enterobacteria can modulate neurodegeneration-associated protein aggregation.
View Article and Find Full Text PDFJ Inorg Biochem
September 2025
National Renewable Energy Laboratory, Biosciences Center, Golden, CO, USA. Electronic address:
Flavin-based electron bifurcation (FBEB) is employed by microorganisms for controlling pools of redox equivalents by reversibly splitting electron pairs into high- and low-energy levels from an initial midpoint potential. Our ability to harness this phenomenon is crucial for biocatalytic design which is limited by our understanding of energy coupling in the bifurcation system. In Pyrococcus furiosus, FBEB is carried out by the NADH-dependent ferredoxin:NADP-oxidoreductase (NfnSL), coupling the uphill reduction of ferredoxin in NfnL to the downhill reduction of NAD in NfnS from oxidation of NADPH.
View Article and Find Full Text PDFIEEE J Biomed Health Inform
September 2025
Drug-target interaction (DTI) identification is of great significance in drug development in various areas, such as drug repositioning and potential drug side effects. Although a great variety of computational methods have been proposed for DTI prediction, it is still a challenge in the face of sparsely correlated drugs or targets. To address the impact of data sparsity on the model, we propose a multi-view neighborhood-enhanced graph contrastive learning approach (MneGCL), which is based on graph clustering according to the adjacency relationship in various similarity networks between drugs or targets, to fully exploit the information of drugs and targets with few corrections.
View Article and Find Full Text PDFFront Genet
August 2025
College of Poultry Production and Management, TANUVAS, Hosur, India.
Background: India's indigenous sheep breeds have evolved under extreme and diverse agro-ecological pressures, yet the genomic basis of their resilience and local adaptation remains poorly understood.
Method: This study combines genomic inbreeding estimates, runs of homozygosity (ROH), population structure analyses, and composite selection scans to investigate three native Indian breeds-Changthangi, Deccani, and Garole-within a panel of nine breeds that also includes populations from Africa (Ethiopian Menz), East and South Asia (Tibetan, Chinese Merino, Bangladesh Garole, Bangladesh East), and Europe (Suffolk).
Results: ROH and heterozygosity estimates revealed strong contrasts: Bangladesh East sheep exhibited high genomic inbreeding (F≈14.