98%
921
2 minutes
20
Long terminal repeat (LTR) retrotransposons belong to the transposable elements (TEs), autonomously replicating genetic elements that integrate into the host's genome. Among animals, Drosophila melanogaster serves as an important model organism for TE research and contains several LTR retrotransposons, including the Ty1-copia family, which is evolutionarily related to retroviruses and forms virus-like particles (VLPs). In this study, we use cryo-focused ion beam (FIB) milling and lift-out approaches to visualize copia VLPs in ovarian cells and intact egg chambers, resolving the in situ copia capsid structure to 7.7 Å resolution by cryoelectron tomography (cryo-ET). Although cytoplasmic copia VLPs vary in size, nuclear VLPs are homogeneous and form densely packed clusters, supporting a model in which nuclear import acts as a size selector. Analyzing flies deficient in the TE-suppressing PIWI-interacting RNA (piRNA) pathway, we observe copia's translocation into the nucleus during spermatogenesis. Our findings provide insights into the replication cycle and cellular structural biology of an active LTR retrotransposon.
Download full-text PDF |
Source |
---|---|
http://dx.doi.org/10.1016/j.cell.2025.02.003 | DOI Listing |
Plant J
September 2025
Biotechnology Center of Southern Taiwan, Academia Sinica, Tainan, 711010, Taiwan.
Transposable elements (TEs) significantly influence genomic diversity and gene regulation in plants. Brassica rapa and B. oleracea, with their distinct domestication histories, offer excellent models to explore TE dynamics.
View Article and Find Full Text PDFBMC Plant Biol
August 2025
Jiangsu Academy of Forestry, Nanjing, 211153, China.
The lack of a high-quality Ulmus parvifolia genome assembly has impeded research on disease resistance and hindered breeding programs for resilient elm cultivars. In this study, we presented a chromosome-level genome assembly of U. parvifolia using integrated sequencing technologies.
View Article and Find Full Text PDFJ Fungi (Basel)
August 2025
College of Information Technology, Jilin Agricultural University, Changchun 130118, China.
The Qinghai-Tibet Plateau (QTP) harbors extreme environmental conditions (e.g., low temperature, intense UV radiation, and hypoxia), presenting unique challenges for biological adaptation.
View Article and Find Full Text PDFbioRxiv
August 2025
Department of Biological Sciences, University at Buffalo, Buffalo, NY, USA.
Structurally complex regions of the genome are increasingly recognized as engines of evolutionary convergence due to their propensity to generate recurrent gene duplications that give rise to similar gene expression patterns and traits across lineages. However the mutational mechanisms driving these duplications and the regulatory changes enabling novel expression patterns remain poorly understood. The primate amylase locus, marked by independent gene duplications, provides an ideal model to investigate these dynamics.
View Article and Find Full Text PDFBioinform Adv
July 2025
State Key Laboratory of Plant Diversity and Specialty Crops, Institute of Botany, Chinese Academy of Sciences, Beijing 100093, China.
Motivation: Long Terminal Repeat Retrotransposons (LTR-RTs) comprise a significant portion of repetitive sequences in numerous plant species. LTR-RTs hold considerable functional significance, as they can impact gene family functionality and contribute to the formation of new genes. Investigating the quantities and activities of LTR-RTs is essential for understanding species' evolutionary dynamics and the foundational mechanisms driving genome evolution.
View Article and Find Full Text PDF