Article Synopsis
- The Herbivore Transcriptome Integrated Resource Database (HTIRDB) is a comprehensive database featuring transcriptomic data from 100 to 105 tissues of various domestic herbivore species, including cattle, goats, and rabbits.
- HTIRDB includes 28,710 additional published datasets, enhancing its scope for research.
- It provides user-friendly tools for comparative transcriptomics, enabling users to identify different types of genes, thus making it a vital resource for studying gene expression in herbivores.
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Article Abstract
Here, we describe the Herbivore Transcriptome Integrated Resource Database (HTIRDB, https://yanglab.hzau.edu.cn/HTIRDB#/). The HTIRDB comprises the self-generated transcriptomic data from 100 to 105 tissues from two female domestic herbivores from six species (cattle, donkey, goat, horse, rabbit, and sika deer) and two breeds of sheep, and an extra 28,710 related published datasets. The HTIRDB user-friendly interface provides tools and functionalities that facilitate the exploration of gene expression between tissues and species. The tools for comparative transcriptomics can be used to identify housekeeping genes, tissue-specific genes, species-specific genes, and species-conserved genes. To date, the HTIRDB is the most extensive transcriptome data resource for domestic herbivores that is freely available.
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| http://www.ncbi.nlm.nih.gov/pmc/articles/PMC11865344 | PMC |
| http://dx.doi.org/10.1002/imt2.267 | DOI Listing |
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