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The concordant mode approach (CMA) is a promising new scheme for dramatically increasing the system size and level of theory achievable in quantum chemical computations of molecular vibrational frequencies. Here, we achieve advances in the CMA hierarchy by computations targeting CCSD(T)/cc-pVTZ (coupled cluster singles and doubles with perturbative triples using a correlation-consistent polarized-valence triple-ζ basis set) benchmarks within the G2 molecular test set, executing a statistical analysis for 1501 frequencies from 111 compounds and then separately solving the refractory case of pyridine. First, MP2/cc-pVTZ (second-order Møller-Plesset perturbation theory with the same basis set) proves to be an excellent and preferred choice for generating the underlying (Level B) normal modes of the CMA scheme. Utilizing this Level B within the CMA-0A method reproduces the 1501 benchmark frequencies with a mean absolute error (MAE) of only 0.11 cm and an attendant standard deviation of 0.49 cm. Second, a convergent CMA-2 method is constituted that allows efficient computation of higher level (Level A) frequencies to any reasonable accuracy threshold by using only Hartree-Fock (HF) and MP2 or density functional theory (DFT) data to generate ξ parameters, which select the sparse off-diagonal force field elements for explicit evaluation at Level A. When Level B = MP2/cc-pVTZ, a cutoff of ξ = 0.02 provides an average maximum absolute error per molecule of only 0.17 cm by incurring merely a 33% increase in average cost over CMA-0A. This CMA-2 method also eradicates the 4 problematic CMA-0A outliers of pyridine with even less effort (ξ = 0.04, 22% increase). Finally, the newly developed CMA procedures are shown to be highly successful when applied to 1-(1-pyrrol-3-yl)ethanol, a new test molecule with diverse types of vibration.
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http://dx.doi.org/10.1021/acs.jctc.4c01240 | DOI Listing |
Ann Acad Med Singap
August 2025
Dementia Research Centre (Singapore), Lee Kong Chian School of Medicine, Nanyang Technology University, Singapore.
Introduction: Interpretation and analysis of magnetic resonance imaging (MRI) scans in clinical settings comprise time-consuming visual ratings and complex neuroimage processing that require trained professionals. To combat these challenges, artificial intelligence (AI) techniques can aid clinicians in interpreting brain MRI for accurate diagnosis of neurodegenerative diseases but they require extensive validation. Thus, the aim of this study was to validate the use of AI-based AQUA (Neurophet Inc.
View Article and Find Full Text PDFJ Histotechnol
September 2025
Department of Pathology, Peking University Third Hospital, Beijing, China.
Amyloidosis encompasses a spectrum of rare disorders characterized by extracellular amyloid deposition. Achieving an accurate early diagnosis of systemic amyloidosis necessitates biopsy-specific pathological evaluation. Formalin-fixed, paraffin-embedded liver biopsy specimens were examined using Congo red staining, electron microscopy, immunohistochemistry (IHC), immunofluorescence, and Congo red-assisted laser microdissection with mass spectrometry (LMD/MS).
View Article and Find Full Text PDFMol Phylogenet Evol
December 2025
Department of Biological and Environmental Sciences, The University of West Alabama, Livingston, AL, USA; Department of Biological Sciences, The University of Alabama, Tuscaloosa, AL, USA.
Lake Baikal ranks among the world's most species-rich freshwater ecosystems; however, the evolutionary histories of endemic taxa remain poorly understood. The unique abiotic environments of Lake Baikal include the only bathybenthic, bathypelagic, and deep hydrothermal vent communities in freshwater, each of which supports species with derived morphological and physiological traits. As the only known vertebrate radiation endemic to a non-tropical ancient lake, Baikal sculpins represent an underappreciated resource for investigating evolutionary processes that underlie adaptive radiation.
View Article and Find Full Text PDFBMC Gastroenterol
August 2025
Department of Imaging, the Second People's Hospital of Changzhou, the Third Affiliated of Nanjing Medical University, 68 Gehu Road, Wujin District, Changzhou, Jiangsu, China.
Unlabelled: Disulfidptosis—a newly characterised mode of regulated cell death implicated in tumorigenesis—exhibits undefined prognostic utility in hepatocellular carcinoma (HCC), particularly concerning disulfidptosis-related long non-coding RNAs (DRLs). Integrating transcriptomic and clinical data from The Cancer Genome Atlas, we identified 807 DRLs and constructed a prognostic signature via univariate Cox regression, LASSO-Cox penalisation, and multivariate Cox analysis. The resulting four-DRL signature (,,,) stratified patients into distinct risk cohorts, with high-risk groups demonstrating significantly reduced overall survival (OS; log-rank < 0.
View Article and Find Full Text PDFCureus
July 2025
Department of Surgery, Division of Ophthalmology, McMaster University, Hamilton, CAN.
Background Musculoskeletal (MSK) pain is a common occupational concern in ophthalmology, often associated with the sustained and ergonomically demanding positions required during clinical and surgical activities. Tasks such as slit-lamp examinations, indirect ophthalmoscopy, and microscope-assisted procedures may contribute to postural strain. Despite this, ergonomics remains an underemphasized component of resident education, even though physical strain during training can influence long-term clinical performance and physician well-being.
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