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Article Abstract

is an emerging hospital-acquired bacterial pathogen, particularly strains harboring plasmid-mediated carbapenemase genes. Here, we recovered and characterized a multidrug-resistant strain, -producing LS81, which was isolated from the abdominal drainage fluid of a clinical patient in China, and further characterized the co-harboring plasmid. LS81 tested positive for the genes by PCR sequencing, with located on a plasmid as confirmed by S1 nuclease pulsed-field gel electrophoresis combined with Southern blotting. In the transconjugants, the genes were successfully transferred to the recipient strain EC600. Whole-genome sequencing and bioinformatics analysis confirmed that this strain belongs to sequence type 196 (ST196), with a complete genome comprising a 5,926,662bp circular chromosome and an 81,451bp IncM2 plasmid encoding (designated pLS81-KPC). The IncM2 plasmid carried multiple β-lactamase genes such as , , and inserted in truncated Tn with the distinctive core structure IS- -IS. A comparison with 46 genomes available in the NCBI database revealed that the closest phylogenetic relative of LS81 is a clinical isolate from a wound swab in the United Kingdom. Ultimately, the pan-genomic analysis unveiled a substantial accessory genome within the strain, alongside significant genomic plasticity within the species, emphasizing the necessity for continuous surveillance of this pathogen in clinical environments.

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http://www.ncbi.nlm.nih.gov/pmc/articles/PMC11588702PMC
http://dx.doi.org/10.3389/fcimb.2024.1492700DOI Listing

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Article Synopsis
  • A multidrug-resistant bacterial strain, LS81, was isolated from a clinical patient's abdominal drainage fluid in China and characterized for its resistance genes.
  • LS81 tested positive for specific carbapenemase genes located on a plasmid and was capable of transferring these genes to other strains.
  • Whole-genome sequencing identified LS81 as belonging to sequence type 196 (ST196) and revealed a complex accessory genome, highlighting the importance of ongoing surveillance for this emerging hospital-acquired pathogen.
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Article Synopsis
  • Carbapenemase-producing Enterobacteriaceae, specifically the ESCPM group, are increasingly recognized as major causes of hospital-acquired infections but lack systematic genomic tracking.
  • A study analyzed 36 clinical isolates from Bulgaria, identifying various carbapenemase genes, with NDM-1 and VIM-4 being the most common.
  • The majority of these resistance genes were found on self-conjugative plasmids, indicating a high potential for gene transfer and reinforcing the need for better infection control protocols.
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