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The quality of silage is uneven, which is due to the difference of epiphytic microorganisms of raw materials. To improve the quality of fermentation, the quantity and composition of epiphytic microorganisms are usually analyzed to better prepare silage. In this research, plate coating method and 16S high-throughput sequencing were used to analyze the differences in the quantity and composition of rice epiphytic microorganisms during different growth stages. The Lactic acid bacteria (LAB) and aerobic bacteria were the highest at the flowering stage, the yeast was the highest at the milk ripening stage, and the mould was the highest at the full ripening stage. And the growth stage also had a great influence on the composition of epiphytic bacterial community, at the phylum level, it was mainly composed of Proteobacteria. And at the genus level, and were dominanted at the flowering stage; and were dominanted at the milk ripening stage; and were dominanted at the dough stage; and were dominated at the full ripening stage. Overall, the growth stage significantly affected the quantity and composition of rice epiphytic microorganisms. Therefore, rice silage can be modulated reasonably according to the number and composition of epiphytic microorganisms in different growth stages.
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http://www.ncbi.nlm.nih.gov/pmc/articles/PMC11578753 | PMC |
http://dx.doi.org/10.3389/fmicb.2024.1451935 | DOI Listing |
New Phytol
September 2025
Canadian Forest Service, Natural Resources Canada, Laurentian Forestry Centre, 1055 Rue du Peps, Québec, QC, G1V 4C7, Canada.
Despite the increasing number of studies investigating tree methane fluxes, the relationships between tree methane fluxes and species traits remain mostly unexplored. We measured leaf and stem methane fluxes of five tree species (Acer saccharinum, Fraxinus nigra, Ulmus americana, Salix nigra, and Populus spp.) in the floodplain of Lake St-Pierre (Québec) and examined how these fluxes vary with species traits (wood density, humidity, pH; leaf water content, pH, stomatal conductance; methanogen and methanotroph relative abundances (RAs) in leaf, wood, and bark).
View Article and Find Full Text PDFCurr Res Microb Sci
July 2025
UBS, Laboratoire de Biotechnologie et Chimie Marines, EMR CNRS 6076, Vannes/Lorient, France.
Marine ecosystems are increasingly affected by climate change and eutrophication, placing considerable stress on macroalgae and potentially disrupting their mutualistic interactions with surface-associated microorganisms, especially bacteria. This study explored the temporal dynamics of epiphytic microbial communities (16S rRNA) and the surface metabolome (LC-MS) of spp. from southern Brittany (France) over a 17-month period.
View Article and Find Full Text PDFMicroorganisms
June 2025
Department of Agronomy, Faculty of Agriculture, Sher-e-Bangla Agricultural University, Sher-e-Bangla Nagar, Dhaka 1207, Bangladesh.
Salinity and heavy metal stress significantly reduce agricultural productivity in arable lands, particularly affecting crops like rice ( L.). This study aimed to evaluate the efficacy of heavy metal-tolerant plant growth-promoting rhizobacteria (HMT-PGPR) in mitigating the harmful effects of salt (NaCl), chromium (Cr), and combined NaCl + Cr stress on rice plants.
View Article and Find Full Text PDFBMC Plant Biol
July 2025
Department of Horticulture, Martin-Gatton College of Agriculture, Food and Environment, University of Kentucky, Lexington, KY, USA.
Background: The phyllosphere, which includes the surfaces of plant leaves and stems, is one of the largest and most diverse microbial habitats on Earth, yet it remains understudied in plant-microbe interaction research. Recent studies have highlighted the significant role of phyllosphere epiphytic bacteria in enhancing plant health. These microorganisms help improve nutrient uptake, defend against pathogens, and increase resilience to environmental stressors.
View Article and Find Full Text PDFJ Vis Exp
June 2025
State Key Laboratory of Tree Genetics and Breeding, Northeast Forestry University; College of Life Science, Northeast Forestry University;
Microorganisms colonizing plant surfaces and internal tissues may possess beneficial functions in promoting plant growth and health. However, information on the microbiome of bark tissues of woody plants remains limited, especially regarding the endophytic and epiphytic bacterial microbiota of the bark of Populus. To overcome this limitation, we established a workflow to quantify the composition and diversity of the endophytic and epiphytic bacterial microbiota colonizing the bark of Populus trichocarpa.
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