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The development of novel subnanometer clusters (SNCs) catalysts with superior catalytic performance depends on the precise control of clusters' atomistic sizes, shapes, and accurate deposition onto surfaces. The intrinsic complexity of the adsorption process complicates the ability to achieve an atomistic understanding of the most relevant structure-reactivity relationships hampering the rational design of novel catalytic materials. In most cases, existing computational approaches rely on just a few structures to draw conclusions on clusters' reactivity thereby neglecting the complexity of the existing energy landscapes thus leading to insufficient sampling and, most likely, unreliable predictions. Moreover, modeling of the actual experimental procedure that is responsible for the deposition of SNCs on surfaces is often not done even though in some cases this procedure may enhance the significance of certain (e.g., metastable) adsorption geometries. This study proposes a novel systematic approach that utilizes global search techniques, specifically, the particle swarm optimization (PSO) method, in conjunction with ab initio calculations, to simulate all stages in the beam experiments, from predicting the most relevant SNCs structures in the beam and on a surface, to their reactivity. To illustrate the main steps of our approach, we consider the deposition of Molybdenum SNC of 6 Mo atoms on a free-standing graphene surface, as well as their catalytic properties with respect to the CO molecule dissociation reaction. Even though our calculations are not exhaustive and serve only to produce an illustration of the method, they are still able to provide insight into the complicated energy landscape of Mo SNCs on graphene demonstrating the catalytic activity of Mo SNCs and the importance of performing statistical sampling of available configurations. This study establishes a reliable procedure for performing theoretical rational design predictions.
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http://dx.doi.org/10.1021/acsami.4c13102 | DOI Listing |
Environ Sci Technol
September 2025
State Key Laboratory of Inorganic Synthesis and Preparative Chemistry, College of Chemistry, Jilin University, Changchun 130012, P. R. China.
Pd-zeolites are promising passive NO adsorber (PNA) materials for mitigating cold-start emissions from lean-burn engines. However, their practical deployment is constrained by insufficient densities and dispersion of isolated Pd active sites as well as their susceptibility to hydrothermal degradation and phosphorus poisoning encountered in vehicle exhaust environments. Herein, we develop a rationally engineered core-shell Pd/SSZ-13@AlO composite, featuring a Pd/SSZ-13 core encapsulated within a mesoporous AlO shell.
View Article and Find Full Text PDFACS Appl Mater Interfaces
September 2025
Jiangsu Key Laboratory of Advanced Catalytic Materials and Technology, Advanced Catalysis and Green Manufacturing Collaborative Innovation Center, Changzhou University, Changzhou 213164, P. R. China.
The development of high-performance, cost-effective non-noble metal catalysts for the oxygen evolution reaction (OER) is critical to advancing sustainable hydrogen production via water electrolysis. Herein, we report a facile and mild strategy for synthesizing amorphous bimetallic organic framework materials (NiFe-MOFs) using pyridine-modified threonine (l-PyThr) as an organic ligand. The optimized NiFe-PyThr-4:1 catalyst exhibits remarkable OER activity, requiring low overpotentials of only 162 and 222 mV to achieve current densities of 10 and 100 mA cm, respectively, along with a small Tafel slope of 34.
View Article and Find Full Text PDFIEEE Trans Comput Biol Bioinform
September 2025
Deciphering the three-dimensional structure of proteins remains a grand challenge in biology and medicine, as it holds the key to understanding their biological functions and facilitating drug discovery. In this paper, we introduce DECIPHER (Deep Encoding of Cellular Interactions and Protein HiErarchical Representation), a novel deep graph learning framework for protein structure prediction. By representing proteins as graphs, where residues and atoms serve as nodes and their interactions form edges, we capture the intricate spatial relationships within these complex biomolecules.
View Article and Find Full Text PDFFEMS Microbiol Rev
September 2025
CIISA - Centre for Interdisciplinary Research in Animal Health, Faculty of Veterinary Medicine, University of Lisbon, Lisbon, Portugal.
African Swine Fever (ASF), caused by the highly contagious African swine fever virus (ASFV), poses a significant threat to domestic and wild pigs worldwide. Despite its limited host range and lack of zoonotic potential, ASF has severe socio-economic and environmental consequences. Current control strategies primarily rely on early detection and culling of infected animals, but these measures are insufficient given the rapid spread of the disease.
View Article and Find Full Text PDFJ Am Chem Soc
September 2025
State Key Laboratory of Supramolecular Structure and Materials, College of Chemistry, Jilin University, Changchun 130012, China.
Metal-organic frameworks (MOFs) are distinguished by their structural diversity, tunable electronic properties, and exceptional performance in various applications. Notably, the electron-donating ability of ligands significantly enhances the ligand-to-metal charge transfer (LMCT) processes within these frameworks, thereby promoting efficient charge migration. Herein, we developed two electron-rich macrocyclic ligands derived from phenothiazine- and phenoxazine-functionalized calix[3]arenes, alongside their corresponding cobalt-coordinated MOFs.
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