98%
921
2 minutes
20
Accurately and efficiently predicting the infrared (IR) spectra of a molecule can provide insights into the structure-properties relationships of molecular species, which has led to a proliferation of machine learning tools designed for this purpose. However, earlier studies have focused primarily on obtaining normalized IR spectra, which limits their potential for a comprehensive analysis of molecular behavior in the IR range. For instance, to fully understand and predict the optical properties, such as the transparency characteristics, it is necessary to predict the molar absorptivity IR spectra instead. Here, we propose a graph-based communicative message passing neural network algorithm that can predict both the peak positions and absolute intensities corresponding to density functional theory calculated molar absorptivities in the IR domain. By modifying existing spectral loss functions, we show that our method is able to predict with DFT-accuracy level the IR molar absorptivities of a series of hydrocarbons containing up to ten carbon atoms and apply the model to a set of larger molecules. We also compare the predicted spectra with those generated by the direct message passing neural network. The results suggest that both algorithms demonstrate similar predictive capabilities for hydrocarbons, indicating that either model could be effectively used in future research on spectral prediction for such systems.
Download full-text PDF |
Source |
---|---|
http://dx.doi.org/10.1021/acs.jpca.4c06745 | DOI Listing |
Ecotoxicol Environ Saf
September 2025
Key Laboratory of Groundwater Resources and Environment, Ministry of Education, Jilin Provincial Key Laboratory of Water Resources and Environment, College of New Energy and Environment, Jilin University, Changchun 130012, China.
Liquid crystal monomers (LCMs) have emerged as novel endocrine disrupting chemicals that affect the growth, development, and metabolism of organisms by binding to nuclear hormone receptors (NHRs). However, the studies on the impact of LCMs' molecular features on their binding affinities remain limited. In this study, considering the challenge of activity cliffs in linear quantitative structure-activity relationship modeling, a multidimensional feature fusion model was developed to predict the binding affinities of 1173 LCMs to 15 NHRs.
View Article and Find Full Text PDFDistrib Comput
June 2025
Computer Science, Durham University, Durham, DH1 3LE United Kingdom.
Beeping models are models for networks of weak devices, such as sensor networks or biological networks. In these networks, nodes are allowed to communicate only via emitting beeps: unary pulses of energy. Listening nodes have only the capability of : they can only distinguish between the presence or absence of a beep, but receive no other information.
View Article and Find Full Text PDFTwenty-one states, the District of Columbia, and the U.S. Virgin Islands have passed Extreme Risk Protection Order (ERPO) laws, risk-based firearm removal policies intended to reduce firearm violence.
View Article and Find Full Text PDFJ Comput Graph Stat
July 2025
Department of Statistics, University of Michigan.
In real-world networks, node attributes are often only partially observed, necessitating imputation to support analysis or enable downstream tasks. However, most existing imputation methods overlook the rich information contained within the connectivity among nodes. This research is inspired by the premise that leveraging all available information should yield improved imputation, provided a sufficient association between attributes and edges.
View Article and Find Full Text PDFJ Cheminform
August 2025
Bioinformatics Institute, Agency for Science, Technology and Research, 30 Biopilis Street, Singapore, 138671, Singapore.
Cyclic peptides are promising drug candidates due to their ability to modulate intracellular protein-protein interactions, a property often inaccessible to small molecules. However, their typically poor membrane permeability limits therapeutic applicability. Accurate computational prediction of permeability can accelerate the identification of cell-permeable candidates, reducing reliance on time-consuming and costly experimental screening.
View Article and Find Full Text PDF