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is the most prominent piRNA cluster locus expressed in ovarian follicle cells, and it is required for female fertility to silence transposons. To determine how is regulated, we used promoter-bashing reporter assays in OSS cells to uncover novel enhancer sequences within the first exons of . We confirmed the enhancer sequence relevance in vivo with new deletion mutants of these regions that compromised piRNA expression and lowered female fertility from activated transposons. Our proteomic analysis of proteins associated with these enhancer sequences discovered the transcription factor Traffic Jam (TJ). knockdowns in OSS cells caused a decrease in transcripts, piRNAs, and multiple Piwi pathway genes. A TJ ChIP-seq analysis from whole flies and OSS cells confirmed TJ binding exactly at the enhancer that was deleted in the new mutant as well as at multiple Piwi pathway gene enhancers. Interestingly, TJ also bound the Long Terminal Repeats of transposons that had decreased expression after knockdowns in OSS cells. Our study reveals the integral role TJ plays in the on-going arms race between selfish transposons and their suppression by the host Piwi pathway and the piRNA cluster locus.
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http://dx.doi.org/10.1101/2024.08.15.608167 | DOI Listing |
Dev Biol
September 2025
Department of Molecular Biosciences, Northwestern University, Evanston IL 60208; Robert Lurie Comprehensive Cancer Center, Northwestern University, Evanston IL 60208. Electronic address:
The activation of progenitor cells near wound sites is a common feature of regeneration across species, but the conserved signaling mechanisms responsible for this step in whole-body regeneration are still incompletely understood. The acoel Hofstenia miamia undergoes whole-body regeneration using Piwi+ pluripotent adult stem cells (neoblasts) that accumulate at amputation sites early in regeneration. The EGFR signaling pathway has broad roles in controlling proliferation, migration, differentiation, and cell survival across metazoans.
View Article and Find Full Text PDFMol Cell
September 2025
Institute of Molecular Biotechnology of the Austrian Academy of Sciences (IMBA), Vienna BioCenter (VBC), Dr. Bohr-Gasse 3, 1030 Vienna, Austria. Electronic address:
PIWI-clade Argonaute proteins and their associated PIWI-interacting RNAs (piRNAs) are essential guardians of genome integrity, silencing transposable elements through distinct nuclear and cytoplasmic pathways. Nuclear PIWI proteins direct heterochromatin formation at transposon loci, while cytoplasmic PIWIs cleave transposon transcripts to initiate piRNA amplification. Both processes rely on target RNA recognition by PIWI-piRNA complexes, yet how this leads to effector recruitment is unclear.
View Article and Find Full Text PDFMethods Mol Biol
August 2025
Deparment of Medical Microbiology, Radboud University Medical Center, Nijmegen, The Netherlands.
The PIWI-interacting RNA (piRNA) pathway plays a crucial role in the defense of metazoan genomes against parasitic transposable elements. The major source of piRNAs in the model organism Drosophila melanogaster is defective transposon copies located in piRNA clusters-genomic regions with a high piRNA density that are thought to serve as an immunological memory of past invasions by those elements. Different approaches have been used to annotate piRNA clusters in model organisms such as flies, mice, and rats, and software such as proTRAC or piClust are available for piRNA cluster annotation.
View Article and Find Full Text PDFBiol Open
September 2025
Department of Regenerative Medicine and Cell Biology, Medical University of South Carolina, Charleston, SC 29425, USA.
Reactivation of transposable elements (TEs) in somatic tissues, particularly of LINE-1, is associated with disease by causing gene mutations and DNA damage. Previous work has shown that the PIWI pathway is crucial for TE suppression in the germline. However, the status and function of this pathway is not well characterized in differentiated somatic cells and there is a lack of consensus on the role of the pathway in somatic tumorigenesis.
View Article and Find Full Text PDFCancer Rep (Hoboken)
August 2025
Department of Experimental Research, South China Hospital, Medical School, Shenzhen University, Shenzhen, China.
Piwi-interacting RNA (piRNA) represents a class of small non-coding RNA molecules, typically ranging in length from 18 to 35 nucleotides. These molecules are critically involved in the preservation of genomic integrity and the regulation of protein translation processes. Recently, emerging scholarly research indicates that piRNA exhibits tissue-specific expression profiles within a variety of human malignancies, where they intricately regulate key signaling pathways at both the transcriptional and post-transcriptional levels.
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