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Purpose: The structural similarity index measure (SSIM) has become a popular quality metric to evaluate QSM in a way that is closer to human perception than RMS error (RMSE). However, SSIM may overpenalize errors in diamagnetic tissues and underpenalize them in paramagnetic tissues, resulting in biasing. In addition, extreme artifacts may compress the dynamic range, resulting in unrealistically high SSIM scores (hacking). To overcome biasing and hacking, we propose XSIM: SSIM implemented in the native QSM range, and with internal parameters optimized for QSM.
Methods: We used forward simulations from a COSMOS ground-truth brain susceptibility map included in the 2016 QSM Reconstruction Challenge to investigate the effect of QSM reconstruction errors on the SSIM, XSIM, and RMSE metrics. We also used these metrics to optimize QSM reconstructions of the in vivo challenge data set. We repeated this experiment with the QSM abdominal phantom. To validate the use of XSIM instead of SSIM for QSM quality assessment across a range of different reconstruction techniques/algorithms, we analyzed the reconstructions submitted to the 2019 QSM Reconstruction Challenge 2.0.
Results: Our experiments confirmed the biasing and hacking effects on the SSIM metric applied to QSM. The XSIM metric was robust to those effects, penalizing the presence of streaking artifacts and reconstruction errors. Using XSIM to optimize QSM reconstruction regularization weights returned less overregularization than SSIM and RMSE.
Conclusion: XSIM is recommended over traditional SSIM to evaluate QSM reconstructions against a known ground truth, as it avoids biasing and hacking effects and provides a larger dynamic range of scores.
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http://dx.doi.org/10.1002/mrm.30271 | DOI Listing |
IEEE Trans Biomed Eng
September 2025
Objective: Quantitative susceptibility mapping (QSM) is a useful magnetic resonance imaging technique. We aim to propose a deep learning (DL)-based method for QSM reconstruction that is robust to data perturbations.
Methods: We developed Diffusion-QSM, a diffusion model-based method with a time-travel and resampling refinement module for high-quality QSM reconstruction.
Magn Reson Med
September 2025
Laboratory for Imaging Science and Technology, Department of Electrical and Computer Engineering, Seoul National University, Seoul, Republic of Korea.
Purpose: -separation is an advanced quantitative susceptibility mapping (QSM) method that is designed to generate paramagnetic ( ) and diamagnetic ( ) susceptibility maps, reflecting the distribution of iron and myelin in the brain. However, vessels have shown artifacts, interfering with the accurate quantification of iron and myelin in applications. To address this challenge, a new vessel segmentation method for -separation is developed.
View Article and Find Full Text PDFPurpose: To develop a new sequence, MIMOSA, for highly-efficient T1, T2, T2*, proton density (PD), and source separation quantitative susceptibility mapping (QSM).
Methods: MIMOSA was developed based on 3D-quantification using an interleaved Look-Locker acquisition sequence with T2 preparation pulse (3D-QALAS) by combining 3D turbo Fast Low Angle Shot (FLASH) and multi-echo gradient echo acquisition modules with a spiral-like Cartesian trajectory to facilitate highly-efficient acquisition. Simulations were performed to optimize the sequence.
Front Neurosci
July 2025
Translational Imaging in Neurology (ThINk) Basel, Department of Medicine and Biomedical Engineering, University Hospital Basel and University of Basel, Basel, Switzerland.
Background: Quantitative susceptibility mapping (QSM) has emerged as a promising paraclinical tool in multiple sclerosis (MS). This retrospective pilot study aims to evaluate whether a recently proposed deep learning-assisted, k-space-operating reconstruction, denoising and super-resolution technique (DLR) applied on 3D-echo-planar-imaging (3DEPI) protocols, has the potential to improve the quality and clinical utility of QSM in MS, at 3T. Secondarily, we assess whether applying DLR vs.
View Article and Find Full Text PDFMAGMA
July 2025
Imaging and Physiology, Skåne University Hospital, Lund, Sweden.
Objective: To evaluate the effects of excluding fatty tissue in QSM of human knee cartilage.
Materials And Methods: Gradient echo images from 18 knee-healthy volunteers were acquired, from which chemical shift corrected field perturbation maps were calculated. Based on these, QSM maps were reconstructed using morphology enabled dipole inversion and one of three masking alternatives: (1) excluding no tissue, (2) excluding bone marrow, and (3) excluding all fatty tissues.