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Autism Spectrum Disorder (ASD) is a neurodevelopmental disorder that requires objective and accurate identification methods for effective early intervention. Previous population-based methods via functional connectivity (FC) analysis ignore the differences between positive and negative FCs, which provide the potential information complementarity. And they also require additional information to construct a pre-defined graph. Meanwhile, two challenging demand attentions are the imbalance of performance caused by the class distribution and the inherent heterogeneity of multi-site data. In this paper, we propose a novel dynamic graph Transformer network based on dual-view connectivity for ASD Identification. It is based on the Autoencoders, which regard the input feature as individual feature and without any inductive bias. First, a dual-view feature extractor is designed to extract individual and complementary information from positive and negative connectivity. Then Graph Transformer network is innovated with a hot plugging K-Nearest Neighbor (KNN) algorithm module which constructs a dynamic population graph without any additional information. Additionally, we introduce the PolyLoss function and the Vrex method to address the class imbalance and improve the model's generalizability. The evaluation experiment on 1102 subjects from the ABIDE I dataset demonstrates our method can achieve superior performance over several state-of-the-art methods and satisfying generalizability for ASD identification.
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http://dx.doi.org/10.1016/j.compbiomed.2024.108415 | DOI Listing |
Neural Netw
August 2025
Faculty of Applied Science, University of British Columbia, Kelowna, Canada. Electronic address:
Feature-based image matching has extensive applications in computer vision. Keypoints detected in images can be naturally represented as graph structures, and Graph Neural Networks (GNNs) have been shown to outperform traditional deep learning techniques. Consequently, the paradigm of image matching via GNNs has gained significant prominence in recent academic research.
View Article and Find Full Text PDFIEEE Comput Graph Appl
September 2025
Capturing indoor environments with 360° images provides a cost-effective method for creating immersive content. However, virtual staging - removing existing furniture and inserting new objects with realistic lighting - remains challenging. We present VISPI (Virtual Staging Pipeline for Single Indoor Panoramic Images), a framework that enables interactive restaging of indoor scenes from a single panoramic image.
View Article and Find Full Text PDFInterdiscip Sci
September 2025
State Key Laboratory of Microbial Metabolism, Shanghai-Islamabad-Belgrade Joint Innovation Center on Antibacterial Resistances, Joint International Research Laboratory of Metabolic & Developmental Sciences, School of Life Sciences and Biotechnology, Shanghai Jiao Tong University, Shanghai, 200240, C
Protein-protein interactions (PPIs) are essential therapeutic targets, yet their large and relatively flat interfaces hinder the development of small-molecule inhibitors. Traditional computational approaches rely heavily on existing chemical libraries or expert heuristics, restricting exploration of novel chemical space. To address these challenges, we present Hot2Mol, a generative deep learning framework for the de novo design of target-specific and drug-like PPI inhibitors.
View Article and Find Full Text PDFBrief Bioinform
August 2025
Department of Thoracic Surgery, The First Affiliated Hospital of Sun Yat-sen University, Zhongshan Second Road 58, Guangzhou, 510080 Guangdong, China.
Drug repositioning (DR) presents a cost-effective strategy for drug development by identifying novel therapeutic applications for existing drugs. Current computational approaches remain constrained by their inability to synergize localized substructure patterns with global network semantics, leading to overreliance on data augmentation to mitigate latent drug-disease association (DDA) information gaps. To address these limitations, we present multi-view stacked graph convolutional network (MVSGDR), a novel DR framework featuring three technical innovations: (i) multi-view stacked module that enables depth-wise feature enhancement through hierarchical aggregation of multi-hop neighborhood interactions across distinct graph convolutional layers; (ii) bi-level subgraph transformer module that decomposes DDAs into METIS (a graph partitioning tool) informative subgraphs for breadth-wise analysis of external and internal subgraph drug-disease relationships; and (iii) negative sampling balancing strategy that mitigates sample imbalance through negative sample synthesis.
View Article and Find Full Text PDFSheng Wu Yi Xue Gong Cheng Xue Za Zhi
August 2025
School of Biomedical Engineering, Southern Medical University, Guangzhou 510515, P. R. China.
The existing epilepsy seizure detection algorithms have problems such as overfitting and poor generalization ability due to high reliance on manual labeling of electroencephalogram's data and data imbalance between seizure and interictal periods. An unsupervised learning detection method for epileptic seizure that jointed graph attention network (GAT) and Transformer framework (GAT-T) was proposed. In this method, channel correlations were adaptively learned by GAT encoder.
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