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The biomechanical and biochemical processes in the biological systems of living organisms are extremely complex. Advances in understanding these processes are mainly achieved by laboratory and clinical investigations, but in recent decades they are supported by computational modeling. Besides enormous efforts and achievements in this modeling, there still is a need for new methods that can be used in everyday research and medical practice. In this report, we give a view of the generality of the finite element methodology introduced by the first author and supported by his collaborators. It is based on the multiscale smeared physical fields, termed as Kojic Transport Model (KTM), published in several journal papers and summarized in a recent book (Kojic et al., 2022) [1]. We review relevant literature to demonstrate the distinctions and advantages of our methodology and indicate possible further applications. We refer to our published results by a selection of a few examples which include modeling of partitioning, blood flow, molecular transport within the pancreas, multiscale-multiphysics model of coupling electrical field and ion concentration, and a model of convective-diffusive transport within the lung parenchyma. Two new examples include a model of convective-diffusive transport within a growing tumor, and drug release from nanofibers with fiber degradation.
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http://dx.doi.org/10.1016/j.heliyon.2024.e26354 | DOI Listing |
Comput Biol Med
September 2025
INSIGNEO Institute for in silico medicine, University of Sheffield, UK; School of Mechanical, Aerospace and Civil Engineering, University of Sheffield, UK. Electronic address:
Modelling cardiovascular disease is at the forefront of efforts to use computational tools to assist in the analysis and forecasting of an individual's state of health. To build trust in such tools, it is crucial to understand how different approaches perform when applied to a nominally identical scenario, both singularly and across a population. To examine such differences, we have studied the flow in aneurysms located on the internal carotid artery and middle cerebral artery using the commercial solver Ansys CFX and the open-source code HemeLB.
View Article and Find Full Text PDFPhys Rev Lett
August 2025
Laboratoire de Physique Théorique de la Matière Condensée, Sorbonne Université, CNRS, 75005 Paris, France.
We investigate nonreciprocal XY (NRXY) models defined on two-dimensional lattices in which the coupling strength of a spin with its neighbors varies with their position in the frame defined by the current spin orientation. As expected from the seminal work of Dadhichi et al., [Nonmutual torques and the unimportance of motility for long-range order in two-dimensional flocks, Phys.
View Article and Find Full Text PDFSci Adv
September 2025
Department of Mechanics, School of Mechanical Engineering, Tianjin University, Tianjin 300350, China.
Acoustic tweezers leverage acoustic radiation forces for noncontact manipulation. One of the core bottlenecks in multidimensional manipulation is the lack of a systematic design methodology, which prevents the generation of an acoustic field that simultaneously meets the collaborative control requirements of multi-degree-of-freedom forces and torques, making it difficult to achieve precise control under conditions of stable suspension, high-frequency rotation, and complex spatial constraints. To address this challenge, we develop an end-to-end inverse design methodology for acoustic tweezers based on coding metasurfaces, establishing a dual-objective, dual-scale optimization paradigm.
View Article and Find Full Text PDFPhys Rev Lett
August 2025
Institute of Theoretical Physics, Chinese Academy of Sciences, Beijing 100190, China.
Quantum low-density parity-check (QLDPC) codes offer a promising path to low-overhead fault-tolerant quantum computation but lack systematic strategies for exploration. In this Letter, we establish a topological framework for studying the bivariate-bicycle codes, a prominent class of QLDPC codes tailored for real-world quantum hardware. Our framework enables the investigation of these codes through universal properties of topological orders.
View Article and Find Full Text PDFProc Natl Acad Sci U S A
September 2025
Dipartimento di Fisica, Sapienza Università di Roma, Roma 00185, Italy.
We analyze the spin-glass transition in a field in finite dimension [Formula: see text] below the upper critical dimension directly at zero temperature using a recently introduced perturbative loop expansion around the Bethe lattice solution. The expansion is generated by the so-called [Formula: see text]-layer construction, and it has [Formula: see text] as the associated small parameter. Computing analytically and numerically these nonstandard diagrams at first order in the [Formula: see text] expansion, we construct an [Formula: see text]-expansion around the upper critical dimension [Formula: see text], with [Formula: see text].
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