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American Trypanosomiasis, also known as Chagas disease, is caused by the protozoan and exhibits limited options for treatment. Natural products offer various structurally complex metabolites with biological activities, including those with anti- potential. The discovery and development of prototypes based on natural products frequently display multiple phases that could be facilitated by machine learning techniques to provide a fast and efficient method for selecting new hit candidates. Using Random Forest and k-Nearest Neighbors, two models were constructed to predict the biological activity of natural products from plants against intracellular amastigotes of . The diterpenoid andrographolide was identified from a virtual screening as a promising hit compound. Hereafter, it was isolated from and chemically characterized by spectral data analysis. Andrographolide was evaluated against trypomastigote and amastigote forms of , showing IC values of 29.4 and 2.9 μM, respectively, while the standard drug benznidazole displayed IC values of 17.7 and 5.0 μM, respectively. Additionally, the isolated compound exhibited a reduced cytotoxicity (CC = 92.8 μM) against mammalian cells and afforded a selectivity index (SI) of 32, similar to that of benznidazole (SI = 39). From the analyses, we can conclude that andrographolide fulfills many requirements implemented by DND to be a hit compound. Therefore, this work successfully obtained machine learning models capable of predicting the activity of compounds against intracellular forms of .
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http://dx.doi.org/10.1021/acs.jcim.3c01410 | DOI Listing |
J Am Chem Soc
September 2025
Department of Chemistry, The Scripps Research Institute, 10550 North Torrey Pines Road, La Jolla, California 92037, United States.
Diversity-oriented synthesis (DOS) has emerged as an efficient strategy for constructing diverse compound libraries, facilitating hit or lead identification in the drug discovery process. In parallel, developing diverse transformations at different sites is an appealing strategy to expand the diversity of appendages on scaffolds. Owing to the availability of C-H bonds at multiple sites of pharmacophores, diversity-oriented C-H activation reactions are an ideal approach to realize this goal.
View Article and Find Full Text PDFRSC Med Chem
August 2025
Institute of Pharmaceutical and Biomedical Sciences, Johannes Gutenberg University Mainz Staudinger Weg 5 55128 Mainz Germany
Parallel syntheses and their throughput capabilities are powerful tools for the rapid generation of molecule libraries, making them highly beneficial for accelerating hit identification in early-stage drug discovery. Utilizing chemical spaces and virtual libraries enhances time and cost efficiency, enabling the faster exploitation of chemically diverse compounds. In this study, a parallel synthesis method for rapidly generating a 5'-amino-5'-deoxy adenosine-based amide and sulfonamide library of 42 compounds is described with high yields and purity, which is economical and ecological due to the reduced requirements for extensive purification.
View Article and Find Full Text PDFPestic Biochem Physiol
November 2025
Department of Entomology and Nematology, Emerging Pathogens Institute, University of Florida, Gainesville, FL 32610, USA. Electronic address:
The global rise of mosquito-borne diseases and widespread resistance to existing insecticides highlight the urgent need for novel, field-relevant mosquitocides. Here, we report the development and validation of a high-throughput, in vivo screening assay capable of evaluating adult mosquito toxicity across large chemical libraries. Utilizing a 96-well plate format, this assay enables simultaneous testing of hundreds of compounds per run using both net and filter paper substrates, with direct measurement of adult mosquito knockdown and mortality via tarsal contact - an exposure route highly relevant to real-world vector control tools such as long-lasting insecticide-treated nets (LLINs) and indoor residual spraying (IRS).
View Article and Find Full Text PDFJ Hazard Mater
September 2025
Key Laboratory of Water and Sediment Sciences, Ministry of Education, College of Environmental Sciences and Engineering, Peking University, Beijing 100871, China; State Environmental Protection Key Laboratory of All Material Fluxes in River Ecosystems, Beijing 100871, China. Electronic address: wlsu
Nitrogen-containing heterocyclic compounds (NHCs), widely present in industrial wastewater, pose significant environmental and health risks, yet their identification and characterization remain poorly understood. Herein, we developed a diagnostic fragment list comprising 20 nitrogen-containing fragments for NHCs, by integrating chemical information from Pubchem with the NIST mass spectral library. Leveraging this list, we employed a diagnostic fragment-assisted nontarget screening approach and identified 151 NHCs in iron and steel industry wastewater.
View Article and Find Full Text PDFJ Chem Inf Model
September 2025
The National and Local Joint Engineering Laboratory of Animal Peptide Drug Development, College of Life Sciences, Hunan Normal University, Changsha 410081 Hunan, China.
Indoleamine 2,3-dioxygenase 1 (IDO1) is a heme-containing enzyme considered as a potential therapeutic target for neurodegenerative diseases and cancer. However, the further development of traditional IDO1 inhibitors has been hindered by their limited clinical efficacy. Recently, type IV apo-IDO1 inhibitors offer a new strategy for developing IDO1 inhibitors due to their highly selective and durable inhibition.
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