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Transglutaminases (TGases) are a family of calcium-dependent enzymes primarily known for their ability to cross-link proteins. Transglutaminase 2 (TG2) is one isozyme in this family whose role is multifaceted. TG2 can act not only as a typical transamidase through its catalytic core but also as a G-protein via its GTP binding site. These two discrete activities are tightly regulated by both environmental stimuli and redox reactions. Ubiquitously expressed in humans, TG2 has been implicated in numerous disease pathologies that require extensive investigation. The catalytic activity of TG2 can be monitored through various mechanisms, including hydrolysis, transamidation, or cleavage of isopeptide bonds. Activity assays are required to monitor the activity of this isozyme not only for studying its transamidation reaction but also for validation of therapeutics designed to abolish this activity. Herein, we present the design, synthesis, and evaluation of a new TG2 activity substrate based on a previously optimized inhibitor scaffold. The substrate exhibits excellent affinity, selectivity, and reactivity with TG2 ( = 3.0 μM). Furthermore, its application also allowed the discovery of unique hysteresis at play within the catalytic activity and inhibition reactivity of TG2.
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http://dx.doi.org/10.1021/acs.biochem.3c00337 | DOI Listing |
J Chem Inf Model
September 2025
School of Medicine and Warshel Institute for Computational Biology, The Chinese University of Hong Kong─Shenzhen, Shenzhen, Guangdong 518172, China.
Argonaute (Ago) is a DNA-guided programmable endonuclease with emerging applications in genome engineering, yet the rate-determining dynamic mechanisms governing its transition from guide-target hybridization to catalytic activation remain unresolved. Here, we employ molecular dynamics simulations and the Traveling-salesman-based Automated Path Searching (TAPS) approach to dissect the target DNA recognition in the middle region (nt 9-12) of Ago. We designed two paths to tackle this problem: one assumed that coordination of the target DNA backbone occurs before base-pairing between the target and guide DNA; the other hypothesized a concerted transition without preferred order between backbone-coordination and base-pairing.
View Article and Find Full Text PDFLangmuir
September 2025
College of Materials Science and Engineering, North University of China, Taiyuan 030051, PR China.
The oxygen evolution reaction (OER), a critical yet kinetically sluggish process in electrochemical water splitting, severely limits efficient hydrogen production. Herein, a simple one-step dynamic hydrogen bubble templated electrodeposition technique is used to prepare a self-supported 3D porous NiCuFeP catalyst with outstanding OER performance. In 1.
View Article and Find Full Text PDFNucleic Acids Res
September 2025
Department of Microbiology, Institute of Biology, University of Kassel, 34132 Kassel, Germany.
Casein kinase 1 (CK1) family members are crucial for ER-Golgi trafficking, calcium signalling, DNA repair, transfer RNA (tRNA) modifications, and circadian rhythmicity. Whether and how substrate interactions and kinase autophosphorylation contribute to CK1 plasticity remains largely unknown. Here, we undertake a comprehensive phylogenetic, cellular, and molecular characterization of budding yeast CK1 Hrr25 and identify human CK1 epsilon (CK1ϵ) as its ortholog.
View Article and Find Full Text PDFJ Colloid Interface Sci
September 2025
Guangxi Key Laboratory of Electrochemical Energy Materials, School of Chemistry and Chemical Engineering, Guangxi University, 100 Daxue Road, Nanning 530004, China. Electronic address:
The 5-hydroxymethylfurfural electrooxidation reaction (HMFOR) stands out due to the value-added production and mild conditions. However, its catalytic efficiency is hampered by sluggish kinetics. Herein, with a focus on optimizing the adsorption and activation of reaction molecules, a CoN-WN heterostructure catalyst is constructed for efficient HMFOR.
View Article and Find Full Text PDFJ Colloid Interface Sci
September 2025
Strategic Research Center for Smart Battery, Korea Basic Science Institute (KBSI), Daejeon 34133, Republic of Korea. Electronic address:
Advancing impactful, economical, and durable Co-based bifunctional electrocatalysts for the oxygen reduction reaction (ORR) and oxygen evolution reaction (OER) has been crucial in developing sustainable energy technologies. In this work, Co and CoN nanoparticles (NPs)-incorporated S, N-doped carbon catalysts (Co/CoN/SNC) were prepared via direct pyrolysis of the CoDATT complex, exhibiting high bifunctional electrocatalytic performance for ORR and OER. The complex precursor, CoDATT, was synthesized for the first time using diaminoterthiophene (DATT) and CoCl.
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