A double-negative feedback loop between NtrBC and a small RNA rewires nitrogen metabolism in legume symbionts.

mBio

Structure, Dynamics and Function of Rhizobacterial Genomes (RhizoRNA Lab), Estación Experimental del Zaidín, Consejo Superior de Investigaciones Científicas (CSIC), Granada, Spain.

Published: December 2023


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Article Abstract

Root nodule endosymbioses between diazotrophic rhizobia and legumes provide the largest input of combined N to the biosphere, thus representing an alternative to harmful chemical fertilizers for sustainable crop production. Rhizobia have evolved intricate strategies to coordinate N assimilation for their own benefit with N fixation to sustain plant growth. The rhizobial N status is transduced by the NtrBC two-component system, the seemingly ubiquitous form of N signal transduction in Proteobacteria. Here, we show that the regulatory sRNA NfeR1 (nodule formation efficiency RNA) of the alfalfa symbiont is transcribed from a complex promoter repressed by NtrC in a N-dependent manner and feedback silences by complementary base-pairing. These findings unveil a more prominent role of NtrC as a transcriptional repressor than hitherto anticipated and a novel RNA-based mechanism for NtrBC regulation. The NtrBC-NfeR1 double-negative feedback loop accurately rewires symbiotic N metabolism and is likely conserved in α-rhizobia.

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http://www.ncbi.nlm.nih.gov/pmc/articles/PMC10746234PMC
http://dx.doi.org/10.1128/mbio.02003-23DOI Listing

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