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Localized molecular orbitals are often used for the analysis of chemical bonds, but they can also serve to efficiently and comprehensibly compute linear response properties. While conventional canonical molecular orbitals provide an adequate basis for the treatment of excited states, a chemically meaningful identification of the different excited-state processes is difficult within such a delocalized orbital basis. In this work, starting from an initial set of supermolecular canonical molecular orbitals, we provide a simple one-step top-down embedding procedure for generating a set of orbitals, which are localized in terms of the supermolecule but delocalized over each subsystem composing the supermolecule. Using an orbital partitioning scheme based on such sets of localized orbitals, we further present a procedure for the construction of local excitations and charge-transfer states within the linear response framework of time-dependent density functional theory (TDDFT). This procedure provides direct access to approximate diabatic excitation energies and, under the Tamm-Dancoff approximation, also their corresponding electronic couplings-quantities that are of primary importance in modeling energy transfer processes in complex biological systems. Our approach is compared with a recently developed diabatization procedure based on subsystem TDDFT using projection operators, which leads to a similar set of working equations. Although both of these methods differ in the general localization strategies adopted and the type of basis functions (Slaters vs Gaussians) employed, an overall decent agreement is obtained.
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http://dx.doi.org/10.1063/5.0137729 | DOI Listing |
Nanoscale
September 2025
Institute of Pure and Applied Sciences, University of Tsukuba, 1-1-1 Tennodai, Tsukuba, Ibaraki, 305-8573, Japan.
[1]Benzothieno[3,2-][1]benzothiophene (BTBT)-based molecules exhibit remarkably high hole mobility, sparking interest in their charge transport mechanisms. However, for thin films, the theoretically proposed mixed-orbital charge transport (MOCT) mechanism, which involves the hybridization of different frontier orbitals between neighboring molecules in the bulk, remains unexplored both experimentally and theoretically. In this study, we prepared a monolayer of 2,7-diphenyl-BTBT (DPh-BTBT) with a unique one-dimensional structure and investigated its molecular-level structure and electronic state.
View Article and Find Full Text PDFInt J Infect Dis
September 2025
SAMRC Centre for Tuberculosis Research, Division of Molecular Biology and Human Genetics, Faculty of Health Sciences, Stellenbosch University, Cape Town, South Africa; Department of Microbiology and Biochemistry, Faculty of Natural and Agricultural Sciences, University of the Free State, Bloemfontei
Background: Mycobacterium simiae is a slow-growing environmental nontuberculous mycobacterium (NTM), commonly isolated from soil and water. M. simiae is not known to transmit zoonotically or via human-to-human contact; infection is presumed to occur through direct environmental exposure.
View Article and Find Full Text PDFCell Rep Med
August 2025
Center for Biomedical-photonics and Molecular Imaging, Advanced Diagnostic-Therapy Technology and Equipment Key Laboratory of Higher Education Institutions in Shaanxi Province, School of Life Science and Technology, Xidian University, Xi'an, Shaanxi 710126, China; Engineering Research Center of Mole
Rapid identification and accurate diagnosis are critical for individuals with acute leukemia (AL). Here, we propose a combined deep learning and surface-enhanced Raman scattering (DL-SERS) classification strategy to achieve rapid and sensitive identification of AL with various subtypes and genetic abnormalities. More than 390 of cerebrospinal fluid (CSF) samples are collected as targets, encompassing healthy control, AL patients, and individuals with other diseases.
View Article and Find Full Text PDFInorg Chem
September 2025
Laboratoire de Chimie Physique Matière et Rayonnement (LCPMR), CNRS UMR 7614, Sorbonne Université (SU), 4 place Jussieu, Paris 75005, France.
The one-photon KV X-ray photoelectron spectra of Na and its hydrated clusters [Na(HO)] ( = 1-6) are dominated by the unusual 1s → 1s3s transition. KV spectroscopy also reveals a pronounced redistribution of the 1s → 1s3p transition cross sections, directly correlated with hydration number and molecular arrangement. Its intrinsic two-step nature, involving simultaneous core ionization and core excitation, enables detailed investigation of solvation-induced electronic structure changes, including dipole-forbidden excitations, core-valence charge transfer, and subtle 1s → V energy shifts.
View Article and Find Full Text PDFInorg Chem
September 2025
College of Chemistry and Chemical Engineering, Key Laboratory of Shandong Provincial Universities for Functional Molecules and Materials, Qingdao University, Qingdao, Shandong 266071, P. R. China.
Molecular piezoelectrics have garnered significant attention in energy harvesting and sensing fields due to their high intrinsic piezoelectricity, low elastic properties, and excellent solution processability. Recent efforts have primarily focused on rationally tuning the piezoelectric performance of these materials through the molecular predesign of organic components. However, the regulation of piezoelectric properties via the central metal ion has remained relatively underexplored.
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