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Purpose: To implement two Artificial Intelligence (AI) methods, radiomics and deep learning, to build diagnostic models for patients presenting with architectural distortion on Digital Breast Tomosynthesis (DBT) images.
Materials And Methods: A total of 298 patients were identified from a retrospective review, and all of them had confirmed pathological diagnoses, 175 malignant and 123 benign. The BI-RADS scores of DBT were obtained from the radiology reports, classified into 2, 3, 4A, 4B, 4C, and 5. The architectural distortion areas on craniocaudal (CC) and mediolateral oblique (MLO) views were manually outlined as the region of interest (ROI) for the radiomics analysis. Features were extracted using PyRadiomics, and then the support vector machine (SVM) was applied to select important features and build the classification model. Deep learning was performed using the ResNet50 algorithm, with the binary output of malignancy and benignity. The Gradient-weighted Class Activation Mapping (Grad-CAM) method was utilized to localize the suspicious areas. The predicted malignancy probability was used to construct the ROC curves, compared by the DeLong test. The binary diagnosis was made using the threshold of ≥ 0.5 as malignant.
Results: The majority of malignant lesions had BI-RADS scores of 4B, 4C, and 5 (148/175 = 84.6%). In the benign group, a substantial number of patients also had high BI-RADS ≥ 4B (56/123 = 45.5%), and the majority had BI-RADS ≥ 4A (102/123 = 82.9%). The radiomics model built using the combined CC+MLO features yielded an area under curve (AUC) of 0.82, the sensitivity of 0.78, specificity of 0.68, and accuracy of 0.74. If only features from CC were used, the AUC was 0.77, and if only features from MLO were used, the AUC was 0.72. The deep-learning model yielded an AUC of 0.61, significantly lower than all radiomics models (p<0.01), which was presumably due to the use of the entire image as input. The Grad-CAM could localize the architectural distortion areas.
Conclusion: The radiomics model can achieve a satisfactory diagnostic accuracy, and the high specificity in the benign group can be used to avoid unnecessary biopsies. Deep learning can be used to localize the architectural distortion areas, which may provide an automatic method for ROI delineation to facilitate the development of a fully-automatic computer-aided diagnosis system using combined AI strategies.
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http://dx.doi.org/10.3389/fonc.2022.991892 | DOI Listing |
Cureus
August 2025
Radiology, Mohammed VI University Hospital, Tangier, MAR.
The hypertrophied column of Bertin (HCB) is a benign anatomical variant of the renal cortex that may mimic a neoplastic mass, particularly on ultrasound, potentially leading to unnecessary diagnostic or surgical interventions. We report the case of a nine-year-old girl in whom a renal lesion was incidentally discovered during follow-up imaging for a post-traumatic subcapsular hematoma. Renal ultrasound revealed an isoechoic mass in the mid-portion of the left kidney, extending into the renal sinus.
View Article and Find Full Text PDFbioRxiv
September 2025
Department of Biomedical Data Science, Geisel School of Medicine, Dartmouth College, Hanover, NH, USA.
High-throughput spatial transcriptomics (ST) now profiles hundreds of thousands of cells or locations per section, creating computational bottlenecks for routine analysis. Sketching, or intelligent sub-sampling, addresses scale by selecting small, representative subsets. While effective for scRNA-seq data, existing sketching methods, which optimize coverage in expression space but ignore physical location, can introduce spatial bias when applied to ST data.
View Article and Find Full Text PDFBiophys J
September 2025
School of Life Sciences, University of Warwick, Coventry, CV4 7AL, UK; Department of Chemistry, University of Warwick, Coventry, CV4 7AL, UK. Electronic address:
MreB, a bacterial actin homolog, plays a pivotal role in defining the shape of rod-shaped bacteria by coordinating peptidoglycan synthesis during cell elongation. It forms filaments that interact with the cytosolic leaflet of the cell membrane, as well as with membrane proteins and other cytosolic proteins. In this study, molecular dynamics (MD) simulations were used to investigate the interactions between Escherichia coli (E.
View Article and Find Full Text PDFArXiv
August 2025
Department of Computational and Systems Biology, University of Pittsburgh, Pittsburgh, Pennsylvania 15260, United States.
A generative model capable of sampling realistic molecules with desired properties could accelerate chemical discovery across a wide range of applications. Toward this goal, significant effort has focused on developing models that jointly sample molecular topology and 3D structure. We present FlowMol3, an open-source, multi-modal flow matching model that advances the state of the art for all-atom, small-molecule generation.
View Article and Find Full Text PDFChem Soc Rev
September 2025
Department of Chemistry, Southern University of Science and Technology, Shenzhen, 518055, Guangdong, China.
Metal halide perovskites (MHPs) are rapidly developing as a class of versatile materials combining the exceptional optoelectronic characteristics with tunable ferroelectricity and nonlinear optical responses. Spanning across the three-dimensional, two-dimensional, and one-dimensional architectures, these materials have demonstrated exceptional structural diversity, providing immense opportunities for tailored property design. We start by referencing the classic oxide perovskites, sharing differences and similarities of these material systems.
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